Hb_006083_010

Information

Type transcription factor
Description TF Family: B3
Location Contig6083: 7229-9907
Sequence    

Annotation

kegg
ID rcu:RCOM_0813720
description DNA binding protein, putative
nr
ID XP_002518781.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q1G3M3
description B3 domain-containing protein At3g19184 OS=Arabidopsis thaliana GN=At3g19184 PE=2 SV=1
trembl
ID B9RYJ7
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0813720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006083_010 0.0 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
2 Hb_001410_040 0.033690222 - - Protein ABIL2, putative [Ricinus communis]
3 Hb_004788_030 0.0337396056 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
4 Hb_009385_010 0.042348258 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
5 Hb_003847_090 0.0435358459 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
6 Hb_008821_030 0.0514167613 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
7 Hb_021142_030 0.0597853339 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
8 Hb_000277_030 0.0619980499 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
9 Hb_019429_020 0.0691266539 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_007747_070 0.0717483466 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
11 Hb_054165_010 0.0733082859 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_001002_020 0.0764444791 - - ATP binding protein, putative [Ricinus communis]
13 Hb_001117_020 0.0846735126 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
14 Hb_005928_010 0.0882786946 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
15 Hb_007894_040 0.1008466621 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
16 Hb_000371_030 0.1023886447 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
17 Hb_136973_020 0.1030516618 - - -
18 Hb_046610_010 0.1041325622 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_100395_010 0.1086835006 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_012146_010 0.1088411507 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]

Gene co-expression network

sample Hb_006083_010 Hb_006083_010 Hb_001410_040 Hb_001410_040 Hb_006083_010--Hb_001410_040 Hb_004788_030 Hb_004788_030 Hb_006083_010--Hb_004788_030 Hb_009385_010 Hb_009385_010 Hb_006083_010--Hb_009385_010 Hb_003847_090 Hb_003847_090 Hb_006083_010--Hb_003847_090 Hb_008821_030 Hb_008821_030 Hb_006083_010--Hb_008821_030 Hb_021142_030 Hb_021142_030 Hb_006083_010--Hb_021142_030 Hb_001410_040--Hb_009385_010 Hb_001410_040--Hb_004788_030 Hb_001410_040--Hb_008821_030 Hb_001410_040--Hb_021142_030 Hb_007747_070 Hb_007747_070 Hb_001410_040--Hb_007747_070 Hb_004788_030--Hb_008821_030 Hb_004788_030--Hb_009385_010 Hb_019429_020 Hb_019429_020 Hb_004788_030--Hb_019429_020 Hb_004788_030--Hb_007747_070 Hb_009385_010--Hb_021142_030 Hb_009385_010--Hb_007747_070 Hb_009385_010--Hb_008821_030 Hb_000277_030 Hb_000277_030 Hb_003847_090--Hb_000277_030 Hb_003847_090--Hb_004788_030 Hb_003847_090--Hb_001410_040 Hb_003847_090--Hb_009385_010 Hb_001002_020 Hb_001002_020 Hb_003847_090--Hb_001002_020 Hb_008821_030--Hb_007747_070 Hb_008821_030--Hb_019429_020 Hb_001117_020 Hb_001117_020 Hb_008821_030--Hb_001117_020 Hb_021142_030--Hb_007747_070 Hb_007894_040 Hb_007894_040 Hb_021142_030--Hb_007894_040 Hb_021142_030--Hb_004788_030 Hb_021142_030--Hb_008821_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.063032 0.14027 0.0715745 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis