Hb_012146_010

Information

Type -
Description -
Location Contig12146: 8403-8810
Sequence    

Annotation

kegg
ID pop:POPTR_0021s00480g
description hypothetical protein
nr
ID XP_011004864.1
description PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A0D2V800
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G018200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012146_010 0.0 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
2 Hb_007894_040 0.0186801191 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
3 Hb_055877_010 0.0284751916 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_007747_070 0.0372906765 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
5 Hb_071654_010 0.0446174379 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
6 Hb_021142_030 0.0621973679 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
7 Hb_009385_010 0.0670263186 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
8 Hb_008821_030 0.0745109394 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
9 Hb_001410_040 0.0752854268 - - Protein ABIL2, putative [Ricinus communis]
10 Hb_004788_030 0.0852809439 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
11 Hb_002267_010 0.0975867889 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
12 Hb_005649_070 0.1041694699 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004241_140 0.1050895991 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
14 Hb_002999_150 0.1062079246 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
15 Hb_006083_010 0.1088411507 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
16 Hb_000045_290 0.1089735988 - - -
17 Hb_001117_020 0.1109632813 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
18 Hb_000371_030 0.1120886016 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
19 Hb_100395_010 0.1146860051 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_019429_020 0.1156063616 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_012146_010 Hb_012146_010 Hb_007894_040 Hb_007894_040 Hb_012146_010--Hb_007894_040 Hb_055877_010 Hb_055877_010 Hb_012146_010--Hb_055877_010 Hb_007747_070 Hb_007747_070 Hb_012146_010--Hb_007747_070 Hb_071654_010 Hb_071654_010 Hb_012146_010--Hb_071654_010 Hb_021142_030 Hb_021142_030 Hb_012146_010--Hb_021142_030 Hb_009385_010 Hb_009385_010 Hb_012146_010--Hb_009385_010 Hb_007894_040--Hb_007747_070 Hb_007894_040--Hb_055877_010 Hb_007894_040--Hb_021142_030 Hb_007894_040--Hb_009385_010 Hb_007894_040--Hb_071654_010 Hb_055877_010--Hb_007747_070 Hb_055877_010--Hb_071654_010 Hb_008821_030 Hb_008821_030 Hb_055877_010--Hb_008821_030 Hb_055877_010--Hb_009385_010 Hb_007747_070--Hb_009385_010 Hb_007747_070--Hb_021142_030 Hb_001410_040 Hb_001410_040 Hb_007747_070--Hb_001410_040 Hb_007747_070--Hb_008821_030 Hb_002267_010 Hb_002267_010 Hb_071654_010--Hb_002267_010 Hb_071654_010--Hb_007747_070 Hb_002999_150 Hb_002999_150 Hb_071654_010--Hb_002999_150 Hb_021142_030--Hb_009385_010 Hb_021142_030--Hb_001410_040 Hb_004788_030 Hb_004788_030 Hb_021142_030--Hb_004788_030 Hb_021142_030--Hb_008821_030 Hb_009385_010--Hb_001410_040 Hb_009385_010--Hb_004788_030 Hb_009385_010--Hb_008821_030 Hb_006083_010 Hb_006083_010 Hb_009385_010--Hb_006083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.17195 0.532412 0.144266 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis