Hb_055877_010

Information

Type -
Description -
Location Contig55877: 1-806
Sequence    

Annotation

kegg
ID pop:POPTR_0017s01950g
description hypothetical protein
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055877_010 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_012146_010 0.0284751916 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
3 Hb_007894_040 0.0417865961 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
4 Hb_007747_070 0.0468635077 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
5 Hb_071654_010 0.0495816223 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
6 Hb_008821_030 0.0713835825 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
7 Hb_009385_010 0.0731528983 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
8 Hb_021142_030 0.0748213715 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_001410_040 0.0797269826 - - Protein ABIL2, putative [Ricinus communis]
10 Hb_004788_030 0.0845811993 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
11 Hb_005649_070 0.0887532012 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004241_140 0.0892402047 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
13 Hb_000045_290 0.0939220121 - - -
14 Hb_002267_010 0.0986958996 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
15 Hb_001117_020 0.1002798436 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
16 Hb_000371_030 0.1040128777 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
17 Hb_019429_020 0.1072684389 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_006083_010 0.1116608948 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
19 Hb_048141_060 0.1198968359 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
20 Hb_002999_150 0.1209188118 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]

Gene co-expression network

sample Hb_055877_010 Hb_055877_010 Hb_012146_010 Hb_012146_010 Hb_055877_010--Hb_012146_010 Hb_007894_040 Hb_007894_040 Hb_055877_010--Hb_007894_040 Hb_007747_070 Hb_007747_070 Hb_055877_010--Hb_007747_070 Hb_071654_010 Hb_071654_010 Hb_055877_010--Hb_071654_010 Hb_008821_030 Hb_008821_030 Hb_055877_010--Hb_008821_030 Hb_009385_010 Hb_009385_010 Hb_055877_010--Hb_009385_010 Hb_012146_010--Hb_007894_040 Hb_012146_010--Hb_007747_070 Hb_012146_010--Hb_071654_010 Hb_021142_030 Hb_021142_030 Hb_012146_010--Hb_021142_030 Hb_012146_010--Hb_009385_010 Hb_007894_040--Hb_007747_070 Hb_007894_040--Hb_021142_030 Hb_007894_040--Hb_009385_010 Hb_007894_040--Hb_071654_010 Hb_007747_070--Hb_009385_010 Hb_007747_070--Hb_021142_030 Hb_001410_040 Hb_001410_040 Hb_007747_070--Hb_001410_040 Hb_007747_070--Hb_008821_030 Hb_002267_010 Hb_002267_010 Hb_071654_010--Hb_002267_010 Hb_071654_010--Hb_007747_070 Hb_002999_150 Hb_002999_150 Hb_071654_010--Hb_002999_150 Hb_004788_030 Hb_004788_030 Hb_008821_030--Hb_004788_030 Hb_008821_030--Hb_001410_040 Hb_008821_030--Hb_009385_010 Hb_019429_020 Hb_019429_020 Hb_008821_030--Hb_019429_020 Hb_001117_020 Hb_001117_020 Hb_008821_030--Hb_001117_020 Hb_009385_010--Hb_001410_040 Hb_009385_010--Hb_021142_030 Hb_009385_010--Hb_004788_030 Hb_006083_010 Hb_006083_010 Hb_009385_010--Hb_006083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0460469 9.25062 31.5465 8.8859 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis