Hb_071654_010

Information

Type -
Description -
Location Contig71654: 2564-5372
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa018489mg
description hypothetical protein
nr
ID AFP55574.1
description non-ltr retroelement reverse transcriptase [Rosa rugosa]
swissprot
ID -
description -
trembl
ID J7G2Z7
description Non-ltr retroelement reverse transcriptase OS=Rosa rugosa PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071654_010 0.0 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
2 Hb_012146_010 0.0446174379 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
3 Hb_055877_010 0.0495816223 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_002267_010 0.0531831952 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
5 Hb_007894_040 0.059191377 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
6 Hb_007747_070 0.0813967461 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
7 Hb_002999_150 0.0866263631 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
8 Hb_048141_060 0.0875727185 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
9 Hb_052764_120 0.0937477834 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
10 Hb_005649_070 0.0956843192 - - conserved hypothetical protein [Ricinus communis]
11 Hb_021142_030 0.1061617174 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
12 Hb_000164_030 0.1064571181 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
13 Hb_004241_140 0.1084345759 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
14 Hb_009385_010 0.1110229502 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
15 Hb_008821_030 0.1125192774 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
16 Hb_001410_040 0.1188396972 - - Protein ABIL2, putative [Ricinus communis]
17 Hb_002435_010 0.1191704745 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
18 Hb_000045_290 0.1213866697 - - -
19 Hb_004788_030 0.1259467627 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
20 Hb_107174_010 0.1264367533 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_071654_010 Hb_071654_010 Hb_012146_010 Hb_012146_010 Hb_071654_010--Hb_012146_010 Hb_055877_010 Hb_055877_010 Hb_071654_010--Hb_055877_010 Hb_002267_010 Hb_002267_010 Hb_071654_010--Hb_002267_010 Hb_007894_040 Hb_007894_040 Hb_071654_010--Hb_007894_040 Hb_007747_070 Hb_007747_070 Hb_071654_010--Hb_007747_070 Hb_002999_150 Hb_002999_150 Hb_071654_010--Hb_002999_150 Hb_012146_010--Hb_007894_040 Hb_012146_010--Hb_055877_010 Hb_012146_010--Hb_007747_070 Hb_021142_030 Hb_021142_030 Hb_012146_010--Hb_021142_030 Hb_009385_010 Hb_009385_010 Hb_012146_010--Hb_009385_010 Hb_055877_010--Hb_007894_040 Hb_055877_010--Hb_007747_070 Hb_008821_030 Hb_008821_030 Hb_055877_010--Hb_008821_030 Hb_055877_010--Hb_009385_010 Hb_052764_120 Hb_052764_120 Hb_002267_010--Hb_052764_120 Hb_048141_060 Hb_048141_060 Hb_002267_010--Hb_048141_060 Hb_000164_030 Hb_000164_030 Hb_002267_010--Hb_000164_030 Hb_002267_010--Hb_002999_150 Hb_002435_010 Hb_002435_010 Hb_002267_010--Hb_002435_010 Hb_007894_040--Hb_007747_070 Hb_007894_040--Hb_021142_030 Hb_007894_040--Hb_009385_010 Hb_007747_070--Hb_009385_010 Hb_007747_070--Hb_021142_030 Hb_001410_040 Hb_001410_040 Hb_007747_070--Hb_001410_040 Hb_007747_070--Hb_008821_030 Hb_003207_220 Hb_003207_220 Hb_002999_150--Hb_003207_220 Hb_107174_010 Hb_107174_010 Hb_002999_150--Hb_107174_010 Hb_002999_150--Hb_052764_120 Hb_002999_150--Hb_007894_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0117993 0.0441215 0.00928826 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis