Hb_048141_060

Information

Type transcription factor
Description TF Family: C2H2
Location Contig48141: 79219-80181
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21520g
description zinc finger family protein
nr
ID XP_011040791.1
description PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
swissprot
ID O65499
description Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1
trembl
ID U5GMX5
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s21520g PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein zat3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048141_060 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
2 Hb_000164_030 0.0270960458 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
3 Hb_002267_010 0.0559245848 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
4 Hb_004724_250 0.0559533934 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_052764_120 0.0834895939 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
6 Hb_071654_010 0.0875727185 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
7 Hb_005649_070 0.090330681 - - conserved hypothetical protein [Ricinus communis]
8 Hb_064971_010 0.0994622094 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
9 Hb_010578_020 0.0996437522 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_002435_010 0.1059057152 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
11 Hb_000668_190 0.1073071972 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
12 Hb_004241_140 0.117997721 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
13 Hb_055877_010 0.1198968359 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_000157_060 0.1208701426 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
15 Hb_002486_090 0.1270114414 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
16 Hb_012146_010 0.1271994762 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
17 Hb_028187_010 0.1279910537 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
18 Hb_002613_030 0.1293706194 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
19 Hb_006142_020 0.1384034533 - - JHL25P11.12 [Jatropha curcas]
20 Hb_002999_150 0.1411098098 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]

Gene co-expression network

sample Hb_048141_060 Hb_048141_060 Hb_000164_030 Hb_000164_030 Hb_048141_060--Hb_000164_030 Hb_002267_010 Hb_002267_010 Hb_048141_060--Hb_002267_010 Hb_004724_250 Hb_004724_250 Hb_048141_060--Hb_004724_250 Hb_052764_120 Hb_052764_120 Hb_048141_060--Hb_052764_120 Hb_071654_010 Hb_071654_010 Hb_048141_060--Hb_071654_010 Hb_005649_070 Hb_005649_070 Hb_048141_060--Hb_005649_070 Hb_000164_030--Hb_004724_250 Hb_064971_010 Hb_064971_010 Hb_000164_030--Hb_064971_010 Hb_000164_030--Hb_005649_070 Hb_000164_030--Hb_002267_010 Hb_000157_060 Hb_000157_060 Hb_000164_030--Hb_000157_060 Hb_002267_010--Hb_052764_120 Hb_002267_010--Hb_071654_010 Hb_002999_150 Hb_002999_150 Hb_002267_010--Hb_002999_150 Hb_002435_010 Hb_002435_010 Hb_002267_010--Hb_002435_010 Hb_010578_020 Hb_010578_020 Hb_004724_250--Hb_010578_020 Hb_004724_250--Hb_064971_010 Hb_004724_250--Hb_002267_010 Hb_004724_250--Hb_052764_120 Hb_052764_120--Hb_010578_020 Hb_052764_120--Hb_002435_010 Hb_003207_220 Hb_003207_220 Hb_052764_120--Hb_003207_220 Hb_052764_120--Hb_002999_150 Hb_012146_010 Hb_012146_010 Hb_071654_010--Hb_012146_010 Hb_055877_010 Hb_055877_010 Hb_071654_010--Hb_055877_010 Hb_007894_040 Hb_007894_040 Hb_071654_010--Hb_007894_040 Hb_007747_070 Hb_007747_070 Hb_071654_010--Hb_007747_070 Hb_071654_010--Hb_002999_150 Hb_004241_140 Hb_004241_140 Hb_005649_070--Hb_004241_140 Hb_000045_290 Hb_000045_290 Hb_005649_070--Hb_000045_290 Hb_001398_110 Hb_001398_110 Hb_005649_070--Hb_001398_110 Hb_005649_070--Hb_055877_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0698217 0.463749 0.0755981 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis