Hb_000164_030

Information

Type -
Description -
Location Contig164: 23123-23533
Sequence    

Annotation

kegg
ID zma:103629965
description RING-H2 finger protein ATL14-like
nr
ID XP_008649289.1
description PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
swissprot
ID Q9LM69
description RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1
trembl
ID A0A096T899
description Uncharacterized protein OS=Zea mays GN=Zm.129415 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger (c3hc4-type ring finger)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_030 0.0 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
2 Hb_048141_060 0.0270960458 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
3 Hb_004724_250 0.0551528146 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_064971_010 0.0766284757 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
5 Hb_005649_070 0.082121642 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002267_010 0.0822148327 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
7 Hb_000157_060 0.1049588849 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
8 Hb_000668_190 0.105037925 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
9 Hb_071654_010 0.1064571181 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
10 Hb_052764_120 0.1096205088 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
11 Hb_004241_140 0.1105309848 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
12 Hb_002486_090 0.11158559 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
13 Hb_006142_020 0.1119072883 - - JHL25P11.12 [Jatropha curcas]
14 Hb_010578_020 0.1157594357 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_028187_010 0.1193359396 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
16 Hb_002435_010 0.1254562222 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
17 Hb_002613_030 0.1254922915 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
18 Hb_108744_010 0.1294755396 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_055877_010 0.131451675 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_000045_290 0.1350483974 - - -

Gene co-expression network

sample Hb_000164_030 Hb_000164_030 Hb_048141_060 Hb_048141_060 Hb_000164_030--Hb_048141_060 Hb_004724_250 Hb_004724_250 Hb_000164_030--Hb_004724_250 Hb_064971_010 Hb_064971_010 Hb_000164_030--Hb_064971_010 Hb_005649_070 Hb_005649_070 Hb_000164_030--Hb_005649_070 Hb_002267_010 Hb_002267_010 Hb_000164_030--Hb_002267_010 Hb_000157_060 Hb_000157_060 Hb_000164_030--Hb_000157_060 Hb_048141_060--Hb_002267_010 Hb_048141_060--Hb_004724_250 Hb_052764_120 Hb_052764_120 Hb_048141_060--Hb_052764_120 Hb_071654_010 Hb_071654_010 Hb_048141_060--Hb_071654_010 Hb_048141_060--Hb_005649_070 Hb_010578_020 Hb_010578_020 Hb_004724_250--Hb_010578_020 Hb_004724_250--Hb_064971_010 Hb_004724_250--Hb_002267_010 Hb_004724_250--Hb_052764_120 Hb_006142_020 Hb_006142_020 Hb_064971_010--Hb_006142_020 Hb_064971_010--Hb_000157_060 Hb_002486_090 Hb_002486_090 Hb_064971_010--Hb_002486_090 Hb_064971_010--Hb_048141_060 Hb_004241_140 Hb_004241_140 Hb_005649_070--Hb_004241_140 Hb_000045_290 Hb_000045_290 Hb_005649_070--Hb_000045_290 Hb_001398_110 Hb_001398_110 Hb_005649_070--Hb_001398_110 Hb_055877_010 Hb_055877_010 Hb_005649_070--Hb_055877_010 Hb_002267_010--Hb_052764_120 Hb_002267_010--Hb_071654_010 Hb_002999_150 Hb_002999_150 Hb_002267_010--Hb_002999_150 Hb_002435_010 Hb_002435_010 Hb_002267_010--Hb_002435_010 Hb_028187_010 Hb_028187_010 Hb_000157_060--Hb_028187_010 Hb_002447_060 Hb_002447_060 Hb_000157_060--Hb_002447_060 Hb_074660_010 Hb_074660_010 Hb_000157_060--Hb_074660_010 Hb_000157_060--Hb_006142_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0847412 0.668923 0.118903 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis