Hb_002486_090

Information

Type -
Description -
Location Contig2486: 83538-84371
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06910g
description POPTRDRAFT_760027; hypothetical protein
nr
ID XP_002307049.1
description hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
swissprot
ID Q7X8C5
description Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1
trembl
ID B9H4L9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06910g PE=4 SV=1
Gene Ontology
ID GO:0016301
description kinase superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25881: 83540-83955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002486_090 0.0 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
2 Hb_064971_010 0.0921971318 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
3 Hb_002613_030 0.0957744236 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
4 Hb_000668_190 0.1089967126 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
5 Hb_000164_030 0.11158559 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
6 Hb_006142_020 0.1116347865 - - JHL25P11.12 [Jatropha curcas]
7 Hb_000739_250 0.1132966821 - - PREDICTED: uncharacterized protein LOC105120821 [Populus euphratica]
8 Hb_000157_060 0.11341453 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
9 Hb_004724_250 0.1153389706 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_048141_060 0.1270114414 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
11 Hb_144649_010 0.1312312699 - - 60S ribosomal protein L34A [Hevea brasiliensis]
12 Hb_002534_040 0.1345128701 - - Calmodulin, putative [Ricinus communis]
13 Hb_000413_220 0.1384823869 - - PREDICTED: kinesin-1 [Jatropha curcas]
14 Hb_108744_010 0.1425078106 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_028187_010 0.1440449023 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
16 Hb_169136_010 0.1481305729 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005649_070 0.1512921842 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004800_030 0.1516167188 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
19 Hb_074660_010 0.1519656211 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
20 Hb_000256_170 0.1521519048 - - PREDICTED: uncharacterized protein LOC105638320 [Jatropha curcas]

Gene co-expression network

sample Hb_002486_090 Hb_002486_090 Hb_064971_010 Hb_064971_010 Hb_002486_090--Hb_064971_010 Hb_002613_030 Hb_002613_030 Hb_002486_090--Hb_002613_030 Hb_000668_190 Hb_000668_190 Hb_002486_090--Hb_000668_190 Hb_000164_030 Hb_000164_030 Hb_002486_090--Hb_000164_030 Hb_006142_020 Hb_006142_020 Hb_002486_090--Hb_006142_020 Hb_000739_250 Hb_000739_250 Hb_002486_090--Hb_000739_250 Hb_064971_010--Hb_006142_020 Hb_004724_250 Hb_004724_250 Hb_064971_010--Hb_004724_250 Hb_064971_010--Hb_000164_030 Hb_000157_060 Hb_000157_060 Hb_064971_010--Hb_000157_060 Hb_048141_060 Hb_048141_060 Hb_064971_010--Hb_048141_060 Hb_002613_030--Hb_004724_250 Hb_000896_130 Hb_000896_130 Hb_002613_030--Hb_000896_130 Hb_002613_030--Hb_000164_030 Hb_002613_030--Hb_064971_010 Hb_002613_030--Hb_048141_060 Hb_000413_220 Hb_000413_220 Hb_000668_190--Hb_000413_220 Hb_002534_040 Hb_002534_040 Hb_000668_190--Hb_002534_040 Hb_000668_190--Hb_000739_250 Hb_000574_180 Hb_000574_180 Hb_000668_190--Hb_000574_180 Hb_000668_190--Hb_000164_030 Hb_002435_010 Hb_002435_010 Hb_000668_190--Hb_002435_010 Hb_000164_030--Hb_048141_060 Hb_000164_030--Hb_004724_250 Hb_005649_070 Hb_005649_070 Hb_000164_030--Hb_005649_070 Hb_002267_010 Hb_002267_010 Hb_000164_030--Hb_002267_010 Hb_000164_030--Hb_000157_060 Hb_169136_010 Hb_169136_010 Hb_006142_020--Hb_169136_010 Hb_108744_010 Hb_108744_010 Hb_006142_020--Hb_108744_010 Hb_000756_030 Hb_000756_030 Hb_006142_020--Hb_000756_030 Hb_152528_010 Hb_152528_010 Hb_006142_020--Hb_152528_010 Hb_006142_020--Hb_000157_060 Hb_000739_250--Hb_000413_220 Hb_000739_250--Hb_000574_180 Hb_000256_170 Hb_000256_170 Hb_000739_250--Hb_000256_170 Hb_005141_020 Hb_005141_020 Hb_000739_250--Hb_005141_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.32629 4.61798 0.798672 0.0558087 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0406093 0

CAGE analysis