Hb_005141_020

Information

Type -
Description -
Location Contig5141: 19807-26268
Sequence    

Annotation

kegg
ID rcu:RCOM_0647130
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002524785.1
description laccase, putative [Ricinus communis]
swissprot
ID Q6Z8L2
description Putative laccase-9 OS=Oryza sativa subsp. japonica GN=LAC9 PE=3 SV=1
trembl
ID B9SFL6
description Laccase OS=Ricinus communis GN=RCOM_0647130 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-14-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005141_020 0.0 - - laccase, putative [Ricinus communis]
2 Hb_003018_210 0.0756031586 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
3 Hb_000035_190 0.1027493661 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002837_120 0.1031442053 - - PREDICTED: legumin A-like [Jatropha curcas]
5 Hb_034498_010 0.1053154475 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
6 Hb_004174_030 0.1054216399 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
7 Hb_000347_310 0.1077760098 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
8 Hb_004097_030 0.1160912061 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
9 Hb_001699_070 0.1169421457 - - conserved hypothetical protein [Ricinus communis]
10 Hb_064396_010 0.1175180158 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000739_250 0.1181471708 - - PREDICTED: uncharacterized protein LOC105120821 [Populus euphratica]
12 Hb_006788_130 0.1189461413 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
13 Hb_005066_050 0.1205763387 - - -
14 Hb_001235_040 0.1222789204 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
15 Hb_001220_020 0.1236984822 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
16 Hb_000084_230 0.1237936474 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
17 Hb_000227_020 0.1248264292 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
18 Hb_000890_140 0.1253460905 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
19 Hb_056196_020 0.1276024191 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
20 Hb_003398_050 0.1277438791 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]

Gene co-expression network

sample Hb_005141_020 Hb_005141_020 Hb_003018_210 Hb_003018_210 Hb_005141_020--Hb_003018_210 Hb_000035_190 Hb_000035_190 Hb_005141_020--Hb_000035_190 Hb_002837_120 Hb_002837_120 Hb_005141_020--Hb_002837_120 Hb_034498_010 Hb_034498_010 Hb_005141_020--Hb_034498_010 Hb_004174_030 Hb_004174_030 Hb_005141_020--Hb_004174_030 Hb_000347_310 Hb_000347_310 Hb_005141_020--Hb_000347_310 Hb_003018_210--Hb_004174_030 Hb_004097_030 Hb_004097_030 Hb_003018_210--Hb_004097_030 Hb_003018_210--Hb_000035_190 Hb_001699_070 Hb_001699_070 Hb_003018_210--Hb_001699_070 Hb_003398_050 Hb_003398_050 Hb_003018_210--Hb_003398_050 Hb_001220_020 Hb_001220_020 Hb_003018_210--Hb_001220_020 Hb_000035_190--Hb_001699_070 Hb_000035_190--Hb_003398_050 Hb_003368_070 Hb_003368_070 Hb_000035_190--Hb_003368_070 Hb_162378_020 Hb_162378_020 Hb_000035_190--Hb_162378_020 Hb_000035_190--Hb_001220_020 Hb_001969_030 Hb_001969_030 Hb_002837_120--Hb_001969_030 Hb_056196_020 Hb_056196_020 Hb_002837_120--Hb_056196_020 Hb_000853_020 Hb_000853_020 Hb_002837_120--Hb_000853_020 Hb_169136_010 Hb_169136_010 Hb_002837_120--Hb_169136_010 Hb_002837_120--Hb_004174_030 Hb_002837_120--Hb_004097_030 Hb_000890_140 Hb_000890_140 Hb_034498_010--Hb_000890_140 Hb_022845_010 Hb_022845_010 Hb_034498_010--Hb_022845_010 Hb_000527_020 Hb_000527_020 Hb_034498_010--Hb_000527_020 Hb_001190_030 Hb_001190_030 Hb_034498_010--Hb_001190_030 Hb_001322_220 Hb_001322_220 Hb_034498_010--Hb_001322_220 Hb_004174_030--Hb_004097_030 Hb_005914_100 Hb_005914_100 Hb_004174_030--Hb_005914_100 Hb_004174_030--Hb_001220_020 Hb_004174_030--Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_004174_030--Hb_002928_150 Hb_006452_210 Hb_006452_210 Hb_000347_310--Hb_006452_210 Hb_001205_280 Hb_001205_280 Hb_000347_310--Hb_001205_280 Hb_001817_200 Hb_001817_200 Hb_000347_310--Hb_001817_200 Hb_002259_100 Hb_002259_100 Hb_000347_310--Hb_002259_100 Hb_002391_260 Hb_002391_260 Hb_000347_310--Hb_002391_260 Hb_001571_070 Hb_001571_070 Hb_000347_310--Hb_001571_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0214457 0.894388 0.286558 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0379663 0

CAGE analysis