Hb_001190_030

Information

Type -
Description -
Location Contig1190: 42600-53596
Sequence    

Annotation

kegg
ID pmum:103334804
description ankyrin repeat-containing protein At3g12360-like
nr
ID CAN70012.1
description hypothetical protein VITISV_017115 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BCG5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017115 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001190_030 0.0 - - hypothetical protein VITISV_017115 [Vitis vinifera]
2 Hb_001322_220 0.0190556028 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
3 Hb_022845_010 0.0613818068 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
4 Hb_002986_150 0.0850458779 - - hypothetical protein glysoja_022060 [Glycine soja]
5 Hb_001728_090 0.0850533 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
6 Hb_003549_110 0.085555011 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
7 Hb_004712_120 0.0855761788 - - Pectinesterase U1 precursor, putative [Ricinus communis]
8 Hb_004994_270 0.0856564022 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
9 Hb_014549_030 0.085759458 - - receptor-kinase, putative [Ricinus communis]
10 Hb_000042_410 0.0858279109 - - Patatin precursor, putative [Ricinus communis]
11 Hb_001504_200 0.0858664913 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
12 Hb_171420_010 0.0859547276 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
13 Hb_002081_110 0.0863586974 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
14 Hb_001031_130 0.0863745596 - - zinc finger protein, putative [Ricinus communis]
15 Hb_187418_010 0.0866305117 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
16 Hb_020479_010 0.0871287231 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
17 Hb_000185_190 0.0871563168 - - hypothetical protein L484_017526 [Morus notabilis]
18 Hb_001948_060 0.087406043 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
19 Hb_015754_010 0.0875031714 - - Galactose oxidase precursor, putative [Ricinus communis]
20 Hb_001579_080 0.087999701 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001190_030 Hb_001190_030 Hb_001322_220 Hb_001322_220 Hb_001190_030--Hb_001322_220 Hb_022845_010 Hb_022845_010 Hb_001190_030--Hb_022845_010 Hb_002986_150 Hb_002986_150 Hb_001190_030--Hb_002986_150 Hb_001728_090 Hb_001728_090 Hb_001190_030--Hb_001728_090 Hb_003549_110 Hb_003549_110 Hb_001190_030--Hb_003549_110 Hb_004712_120 Hb_004712_120 Hb_001190_030--Hb_004712_120 Hb_001322_220--Hb_022845_010 Hb_000185_190 Hb_000185_190 Hb_001322_220--Hb_000185_190 Hb_015754_010 Hb_015754_010 Hb_001322_220--Hb_015754_010 Hb_001031_130 Hb_001031_130 Hb_001322_220--Hb_001031_130 Hb_002081_110 Hb_002081_110 Hb_001322_220--Hb_002081_110 Hb_000654_060 Hb_000654_060 Hb_022845_010--Hb_000654_060 Hb_120289_010 Hb_120289_010 Hb_022845_010--Hb_120289_010 Hb_152528_010 Hb_152528_010 Hb_022845_010--Hb_152528_010 Hb_000162_160 Hb_000162_160 Hb_022845_010--Hb_000162_160 Hb_002986_150--Hb_001728_090 Hb_004994_270 Hb_004994_270 Hb_002986_150--Hb_004994_270 Hb_014549_030 Hb_014549_030 Hb_002986_150--Hb_014549_030 Hb_002986_150--Hb_003549_110 Hb_002986_150--Hb_004712_120 Hb_000042_410 Hb_000042_410 Hb_002986_150--Hb_000042_410 Hb_001728_090--Hb_003549_110 Hb_001728_090--Hb_004712_120 Hb_001504_200 Hb_001504_200 Hb_001728_090--Hb_001504_200 Hb_001728_090--Hb_004994_270 Hb_001728_090--Hb_014549_030 Hb_003549_110--Hb_004712_120 Hb_003549_110--Hb_001504_200 Hb_187418_010 Hb_187418_010 Hb_003549_110--Hb_187418_010 Hb_020479_010 Hb_020479_010 Hb_003549_110--Hb_020479_010 Hb_004712_120--Hb_001504_200 Hb_004712_120--Hb_187418_010 Hb_004712_120--Hb_020479_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0274677 1.25537 0.626142 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis