Hb_001031_130

Information

Type -
Description -
Location Contig1031: 177643-178170
Sequence    

Annotation

kegg
ID rcu:RCOM_0610840
description zinc finger protein, putative
nr
ID XP_002522020.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LB81
description GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1
trembl
ID B9S7Q1
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0610840 PE=4 SV=1
Gene Ontology
ID GO:0016788
description li-tolerant lipase 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01277: 177565-180427
cDNA
(Sanger)
(ID:Location)		 003_J24.ab1: 177565-179167

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001031_130 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_002081_110 9.1221e-05 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
3 Hb_171420_010 0.0026291999 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
4 Hb_000042_410 0.0035366026 - - Patatin precursor, putative [Ricinus communis]
5 Hb_000185_190 0.0039809871 - - hypothetical protein L484_017526 [Morus notabilis]
6 Hb_014549_030 0.0040565177 - - receptor-kinase, putative [Ricinus communis]
7 Hb_004994_270 0.0048878129 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
8 Hb_015754_010 0.0055128948 - - Galactose oxidase precursor, putative [Ricinus communis]
9 Hb_001579_080 0.0075360178 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_000771_010 0.0114688881 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_002986_150 0.0142479614 - - hypothetical protein glysoja_022060 [Glycine soja]
12 Hb_166937_010 0.0156167214 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
13 Hb_001728_090 0.0166353764 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
14 Hb_013607_020 0.0172178879 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_064476_010 0.0212160923 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
16 Hb_003549_110 0.024573413 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
17 Hb_004712_120 0.0247655012 - - Pectinesterase U1 precursor, putative [Ricinus communis]
18 Hb_000243_270 0.0252378441 - - Pectinesterase-2 precursor, putative [Ricinus communis]
19 Hb_001300_110 0.0262684639 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
20 Hb_001504_200 0.0270952507 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001031_130 Hb_001031_130 Hb_002081_110 Hb_002081_110 Hb_001031_130--Hb_002081_110 Hb_171420_010 Hb_171420_010 Hb_001031_130--Hb_171420_010 Hb_000042_410 Hb_000042_410 Hb_001031_130--Hb_000042_410 Hb_000185_190 Hb_000185_190 Hb_001031_130--Hb_000185_190 Hb_014549_030 Hb_014549_030 Hb_001031_130--Hb_014549_030 Hb_004994_270 Hb_004994_270 Hb_001031_130--Hb_004994_270 Hb_002081_110--Hb_171420_010 Hb_002081_110--Hb_000042_410 Hb_002081_110--Hb_014549_030 Hb_002081_110--Hb_000185_190 Hb_002081_110--Hb_004994_270 Hb_171420_010--Hb_000042_410 Hb_171420_010--Hb_014549_030 Hb_171420_010--Hb_004994_270 Hb_171420_010--Hb_000185_190 Hb_000042_410--Hb_014549_030 Hb_000042_410--Hb_004994_270 Hb_000042_410--Hb_000185_190 Hb_015754_010 Hb_015754_010 Hb_000185_190--Hb_015754_010 Hb_001579_080 Hb_001579_080 Hb_000185_190--Hb_001579_080 Hb_000771_010 Hb_000771_010 Hb_000185_190--Hb_000771_010 Hb_014549_030--Hb_004994_270 Hb_014549_030--Hb_000185_190 Hb_004994_270--Hb_000185_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 143.82 77.3494 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis