Hb_000771_010

Information

Type -
Description -
Location Contig771: 1006-1713
Sequence    

Annotation

kegg
ID rcu:RCOM_1579710
description ubiquitin-protein ligase, putative
nr
ID XP_002513564.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIJ5
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1579710 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_010 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_001579_080 0.0039330092 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_166937_010 0.0041481346 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
4 Hb_013607_020 0.0057494596 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
5 Hb_015754_010 0.0059561474 - - Galactose oxidase precursor, putative [Ricinus communis]
6 Hb_000185_190 0.0074880411 - - hypothetical protein L484_017526 [Morus notabilis]
7 Hb_064476_010 0.0097481618 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
8 Hb_001031_130 0.0114688881 - - zinc finger protein, putative [Ricinus communis]
9 Hb_002081_110 0.0115601042 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
10 Hb_000243_270 0.0137705597 - - Pectinesterase-2 precursor, putative [Ricinus communis]
11 Hb_171420_010 0.0140979128 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
12 Hb_001300_110 0.0148013684 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
13 Hb_000042_410 0.0150052397 - - Patatin precursor, putative [Ricinus communis]
14 Hb_014549_030 0.0155251078 - - receptor-kinase, putative [Ricinus communis]
15 Hb_004994_270 0.0163563224 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
16 Hb_007524_020 0.0170201929 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
17 Hb_000506_060 0.0206229759 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
18 Hb_003363_100 0.0229835289 - - -
19 Hb_002986_150 0.0257150996 - - hypothetical protein glysoja_022060 [Glycine soja]
20 Hb_168078_010 0.026011077 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]

Gene co-expression network

sample Hb_000771_010 Hb_000771_010 Hb_001579_080 Hb_001579_080 Hb_000771_010--Hb_001579_080 Hb_166937_010 Hb_166937_010 Hb_000771_010--Hb_166937_010 Hb_013607_020 Hb_013607_020 Hb_000771_010--Hb_013607_020 Hb_015754_010 Hb_015754_010 Hb_000771_010--Hb_015754_010 Hb_000185_190 Hb_000185_190 Hb_000771_010--Hb_000185_190 Hb_064476_010 Hb_064476_010 Hb_000771_010--Hb_064476_010 Hb_001579_080--Hb_015754_010 Hb_001579_080--Hb_000185_190 Hb_001031_130 Hb_001031_130 Hb_001579_080--Hb_001031_130 Hb_002081_110 Hb_002081_110 Hb_001579_080--Hb_002081_110 Hb_001579_080--Hb_166937_010 Hb_166937_010--Hb_013607_020 Hb_166937_010--Hb_064476_010 Hb_000243_270 Hb_000243_270 Hb_166937_010--Hb_000243_270 Hb_166937_010--Hb_015754_010 Hb_013607_020--Hb_064476_010 Hb_013607_020--Hb_000243_270 Hb_001300_110 Hb_001300_110 Hb_013607_020--Hb_001300_110 Hb_013607_020--Hb_001579_080 Hb_015754_010--Hb_000185_190 Hb_015754_010--Hb_001031_130 Hb_015754_010--Hb_002081_110 Hb_171420_010 Hb_171420_010 Hb_015754_010--Hb_171420_010 Hb_000185_190--Hb_001031_130 Hb_000185_190--Hb_002081_110 Hb_000185_190--Hb_171420_010 Hb_064476_010--Hb_000243_270 Hb_064476_010--Hb_001300_110 Hb_007524_020 Hb_007524_020 Hb_064476_010--Hb_007524_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0537543 0.0305876 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis