Hb_064476_010

Information

Type -
Description -
Location Contig64476: 347-833
Sequence    

Annotation

kegg
ID cit:102609808
description beta-amyrin synthase-like
nr
ID XP_011102143.1
description PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
swissprot
ID A8CDT2
description Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1
trembl
ID Q401R6
description Terpene cyclase/mutase family member OS=Euphorbia tirucalli GN=EtAS PE=2 SV=1
Gene Ontology
ID GO:0042300
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064476_010 0.0 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
2 Hb_013607_020 0.0039987914 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
3 Hb_000243_270 0.0040226115 - - Pectinesterase-2 precursor, putative [Ricinus communis]
4 Hb_001300_110 0.0050534948 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
5 Hb_166937_010 0.0056001175 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
6 Hb_007524_020 0.0072725071 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
7 Hb_000771_010 0.0097481618 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000506_060 0.0108756743 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
9 Hb_003363_100 0.0132365318 - - -
10 Hb_001579_080 0.0136809606 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_015754_010 0.0157039428 - - Galactose oxidase precursor, putative [Ricinus communis]
12 Hb_168078_010 0.0162645311 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
13 Hb_000185_190 0.0172356966 - - hypothetical protein L484_017526 [Morus notabilis]
14 Hb_027802_030 0.0189568805 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
15 Hb_000574_060 0.0200197905 - - hypothetical protein F775_19731 [Aegilops tauschii]
16 Hb_001031_130 0.0212160923 - - zinc finger protein, putative [Ricinus communis]
17 Hb_002081_110 0.0213072966 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
18 Hb_006469_100 0.0215648119 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
19 Hb_171420_010 0.0238447487 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
20 Hb_000042_410 0.0247519355 - - Patatin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_064476_010 Hb_064476_010 Hb_013607_020 Hb_013607_020 Hb_064476_010--Hb_013607_020 Hb_000243_270 Hb_000243_270 Hb_064476_010--Hb_000243_270 Hb_001300_110 Hb_001300_110 Hb_064476_010--Hb_001300_110 Hb_166937_010 Hb_166937_010 Hb_064476_010--Hb_166937_010 Hb_007524_020 Hb_007524_020 Hb_064476_010--Hb_007524_020 Hb_000771_010 Hb_000771_010 Hb_064476_010--Hb_000771_010 Hb_013607_020--Hb_166937_010 Hb_013607_020--Hb_000771_010 Hb_013607_020--Hb_000243_270 Hb_013607_020--Hb_001300_110 Hb_001579_080 Hb_001579_080 Hb_013607_020--Hb_001579_080 Hb_000243_270--Hb_001300_110 Hb_000243_270--Hb_007524_020 Hb_000506_060 Hb_000506_060 Hb_000243_270--Hb_000506_060 Hb_003363_100 Hb_003363_100 Hb_000243_270--Hb_003363_100 Hb_001300_110--Hb_007524_020 Hb_001300_110--Hb_000506_060 Hb_001300_110--Hb_003363_100 Hb_166937_010--Hb_000771_010 Hb_166937_010--Hb_001579_080 Hb_166937_010--Hb_000243_270 Hb_015754_010 Hb_015754_010 Hb_166937_010--Hb_015754_010 Hb_007524_020--Hb_000506_060 Hb_007524_020--Hb_003363_100 Hb_168078_010 Hb_168078_010 Hb_007524_020--Hb_168078_010 Hb_000771_010--Hb_001579_080 Hb_000771_010--Hb_015754_010 Hb_000185_190 Hb_000185_190 Hb_000771_010--Hb_000185_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.853942 0.509602 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis