Hb_000243_270

Information

Type -
Description -
Location Contig243: 254556-256123
Sequence    

Annotation

kegg
ID rcu:RCOM_0291660
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_002531506.1
description Pectinesterase-2 precursor, putative [Ricinus communis]
swissprot
ID Q8VYZ3
description Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1
trembl
ID B9SZT7
description Pectinesterase OS=Ricinus communis GN=RCOM_0291660 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase 53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25388: 254526-255588 , PASA_asmbl_25389: 254426-256249
cDNA
(Sanger)
(ID:Location)		 050_B13.ab1: 255383-256248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_270 0.0 - - Pectinesterase-2 precursor, putative [Ricinus communis]
2 Hb_001300_110 0.0010308915 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
3 Hb_007524_020 0.0032499327 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
4 Hb_064476_010 0.0040226115 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
5 Hb_000506_060 0.0068531795 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
6 Hb_013607_020 0.0080213521 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
7 Hb_003363_100 0.009214111 - - -
8 Hb_166937_010 0.0096226435 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
9 Hb_168078_010 0.0122422303 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
10 Hb_000771_010 0.0137705597 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_027802_030 0.0149347099 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
12 Hb_000574_060 0.0159976773 - - hypothetical protein F775_19731 [Aegilops tauschii]
13 Hb_006469_100 0.0175427883 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
14 Hb_001579_080 0.0177031855 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_015754_010 0.0197260591 - - Galactose oxidase precursor, putative [Ricinus communis]
16 Hb_000185_190 0.0212577217 - - hypothetical protein L484_017526 [Morus notabilis]
17 Hb_001031_130 0.0252378441 - - zinc finger protein, putative [Ricinus communis]
18 Hb_002081_110 0.0253290414 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
19 Hb_141016_010 0.0260273265 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
20 Hb_171420_010 0.0278662911 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]

Gene co-expression network

sample Hb_000243_270 Hb_000243_270 Hb_001300_110 Hb_001300_110 Hb_000243_270--Hb_001300_110 Hb_007524_020 Hb_007524_020 Hb_000243_270--Hb_007524_020 Hb_064476_010 Hb_064476_010 Hb_000243_270--Hb_064476_010 Hb_000506_060 Hb_000506_060 Hb_000243_270--Hb_000506_060 Hb_013607_020 Hb_013607_020 Hb_000243_270--Hb_013607_020 Hb_003363_100 Hb_003363_100 Hb_000243_270--Hb_003363_100 Hb_001300_110--Hb_007524_020 Hb_001300_110--Hb_064476_010 Hb_001300_110--Hb_000506_060 Hb_001300_110--Hb_003363_100 Hb_001300_110--Hb_013607_020 Hb_007524_020--Hb_000506_060 Hb_007524_020--Hb_003363_100 Hb_007524_020--Hb_064476_010 Hb_168078_010 Hb_168078_010 Hb_007524_020--Hb_168078_010 Hb_064476_010--Hb_013607_020 Hb_166937_010 Hb_166937_010 Hb_064476_010--Hb_166937_010 Hb_000771_010 Hb_000771_010 Hb_064476_010--Hb_000771_010 Hb_000506_060--Hb_003363_100 Hb_000506_060--Hb_168078_010 Hb_027802_030 Hb_027802_030 Hb_000506_060--Hb_027802_030 Hb_013607_020--Hb_166937_010 Hb_013607_020--Hb_000771_010 Hb_001579_080 Hb_001579_080 Hb_013607_020--Hb_001579_080 Hb_003363_100--Hb_168078_010 Hb_003363_100--Hb_027802_030 Hb_000574_060 Hb_000574_060 Hb_003363_100--Hb_000574_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.31988 0.803212 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis