Hb_027802_030

Information

Type transcription factor
Description TF Family: HB
Location Contig27802: 43916-45439
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11800g
description POPTRDRAFT_1105227; hypothetical protein
nr
ID XP_002323851.2
description hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
swissprot
ID Q00466
description Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4
trembl
ID B9IJW4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11800g PE=4 SV=2
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29014: 43834-44220 , PASA_asmbl_29015: 44283-45516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027802_030 0.0 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
2 Hb_000574_060 0.0010630644 - - hypothetical protein F775_19731 [Aegilops tauschii]
3 Hb_006469_100 0.0026083391 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
4 Hb_168078_010 0.002692668 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
5 Hb_003363_100 0.0057209008 - - -
6 Hb_000506_060 0.0080818481 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
7 Hb_141016_010 0.011094252 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
8 Hb_007524_020 0.0116849956 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
9 Hb_001300_110 0.013903901 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
10 Hb_004375_090 0.0145187751 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
11 Hb_000243_270 0.0149347099 - - Pectinesterase-2 precursor, putative [Ricinus communis]
12 Hb_001104_030 0.0177816021 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
13 Hb_064476_010 0.0189568805 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
14 Hb_013607_020 0.0229549944 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_166937_010 0.0245559818 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
16 Hb_009711_060 0.0247243509 - - -
17 Hb_151697_010 0.0249858108 - - clathrin assembly protein, putative [Ricinus communis]
18 Hb_183658_010 0.0260899502 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_000771_010 0.0287029682 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_002106_020 0.0290434632 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]

Gene co-expression network

sample Hb_027802_030 Hb_027802_030 Hb_000574_060 Hb_000574_060 Hb_027802_030--Hb_000574_060 Hb_006469_100 Hb_006469_100 Hb_027802_030--Hb_006469_100 Hb_168078_010 Hb_168078_010 Hb_027802_030--Hb_168078_010 Hb_003363_100 Hb_003363_100 Hb_027802_030--Hb_003363_100 Hb_000506_060 Hb_000506_060 Hb_027802_030--Hb_000506_060 Hb_141016_010 Hb_141016_010 Hb_027802_030--Hb_141016_010 Hb_000574_060--Hb_006469_100 Hb_000574_060--Hb_168078_010 Hb_000574_060--Hb_003363_100 Hb_000574_060--Hb_000506_060 Hb_000574_060--Hb_141016_010 Hb_006469_100--Hb_168078_010 Hb_006469_100--Hb_003363_100 Hb_006469_100--Hb_141016_010 Hb_006469_100--Hb_000506_060 Hb_168078_010--Hb_003363_100 Hb_168078_010--Hb_000506_060 Hb_007524_020 Hb_007524_020 Hb_168078_010--Hb_007524_020 Hb_003363_100--Hb_000506_060 Hb_003363_100--Hb_007524_020 Hb_001300_110 Hb_001300_110 Hb_003363_100--Hb_001300_110 Hb_000506_060--Hb_007524_020 Hb_000506_060--Hb_001300_110 Hb_000243_270 Hb_000243_270 Hb_000506_060--Hb_000243_270 Hb_004375_090 Hb_004375_090 Hb_141016_010--Hb_004375_090 Hb_001104_030 Hb_001104_030 Hb_141016_010--Hb_001104_030 Hb_009711_060 Hb_009711_060 Hb_141016_010--Hb_009711_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.62592 1.06355 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis