Hb_006469_100

Information

Type -
Description -
Location Contig6469: 134842-136946
Sequence    

Annotation

kegg
ID mdm:103429958
description putative ribonuclease H protein At1g65750
nr
ID XP_008366311.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
swissprot
ID -
description -
trembl
ID M7YL00
description Uncharacterized protein OS=Triticum urartu GN=TRIUR3_15210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006469_100 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
2 Hb_000574_060 0.0015452763 - - hypothetical protein F775_19731 [Aegilops tauschii]
3 Hb_027802_030 0.0026083391 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
4 Hb_168078_010 0.005300993 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
5 Hb_003363_100 0.0083291928 - - -
6 Hb_141016_010 0.008486005 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
7 Hb_000506_060 0.0106901016 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
8 Hb_004375_090 0.0119106048 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
9 Hb_007524_020 0.0142931689 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
10 Hb_001104_030 0.0151735259 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
11 Hb_001300_110 0.0165120118 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
12 Hb_000243_270 0.0175427883 - - Pectinesterase-2 precursor, putative [Ricinus communis]
13 Hb_064476_010 0.0215648119 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
14 Hb_009711_060 0.0221165424 - - -
15 Hb_151697_010 0.0223780141 - - clathrin assembly protein, putative [Ricinus communis]
16 Hb_183658_010 0.0234822051 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
17 Hb_013607_020 0.0255627466 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
18 Hb_002106_020 0.0264358672 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
19 Hb_166937_010 0.027163653 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
20 Hb_000556_210 0.0290214078 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]

Gene co-expression network

sample Hb_006469_100 Hb_006469_100 Hb_000574_060 Hb_000574_060 Hb_006469_100--Hb_000574_060 Hb_027802_030 Hb_027802_030 Hb_006469_100--Hb_027802_030 Hb_168078_010 Hb_168078_010 Hb_006469_100--Hb_168078_010 Hb_003363_100 Hb_003363_100 Hb_006469_100--Hb_003363_100 Hb_141016_010 Hb_141016_010 Hb_006469_100--Hb_141016_010 Hb_000506_060 Hb_000506_060 Hb_006469_100--Hb_000506_060 Hb_000574_060--Hb_027802_030 Hb_000574_060--Hb_168078_010 Hb_000574_060--Hb_003363_100 Hb_000574_060--Hb_000506_060 Hb_000574_060--Hb_141016_010 Hb_027802_030--Hb_168078_010 Hb_027802_030--Hb_003363_100 Hb_027802_030--Hb_000506_060 Hb_027802_030--Hb_141016_010 Hb_168078_010--Hb_003363_100 Hb_168078_010--Hb_000506_060 Hb_007524_020 Hb_007524_020 Hb_168078_010--Hb_007524_020 Hb_003363_100--Hb_000506_060 Hb_003363_100--Hb_007524_020 Hb_001300_110 Hb_001300_110 Hb_003363_100--Hb_001300_110 Hb_004375_090 Hb_004375_090 Hb_141016_010--Hb_004375_090 Hb_001104_030 Hb_001104_030 Hb_141016_010--Hb_001104_030 Hb_009711_060 Hb_009711_060 Hb_141016_010--Hb_009711_060 Hb_000506_060--Hb_007524_020 Hb_000506_060--Hb_001300_110 Hb_000243_270 Hb_000243_270 Hb_000506_060--Hb_000243_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0901235 0.0596965 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis