Hb_141016_010

Information

Type -
Description -
Location Contig141016: 3801-4531
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17490g
description POPTRDRAFT_247314; hypothetical protein
nr
ID KDP45220.1
description hypothetical protein JCGZ_15085 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15085 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141016_010 0.0 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
2 Hb_004375_090 0.0034247285 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
3 Hb_001104_030 0.0066878404 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
4 Hb_006469_100 0.008486005 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
5 Hb_000574_060 0.010031232 - - hypothetical protein F775_19731 [Aegilops tauschii]
6 Hb_027802_030 0.011094252 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
7 Hb_009711_060 0.0136314831 - - -
8 Hb_168078_010 0.0137867651 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
9 Hb_151697_010 0.0138929842 - - clathrin assembly protein, putative [Ricinus communis]
10 Hb_183658_010 0.0149973039 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_003363_100 0.0168147505 - - -
12 Hb_002106_020 0.0179513473 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
13 Hb_000506_060 0.019175451 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
14 Hb_000556_210 0.0205372654 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
15 Hb_007524_020 0.0227781302 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
16 Hb_001300_110 0.0249966918 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
17 Hb_002284_140 0.0256352152 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
18 Hb_000243_270 0.0260273265 - - Pectinesterase-2 precursor, putative [Ricinus communis]
19 Hb_004092_020 0.0260322238 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
20 Hb_064476_010 0.0300487297 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]

Gene co-expression network

sample Hb_141016_010 Hb_141016_010 Hb_004375_090 Hb_004375_090 Hb_141016_010--Hb_004375_090 Hb_001104_030 Hb_001104_030 Hb_141016_010--Hb_001104_030 Hb_006469_100 Hb_006469_100 Hb_141016_010--Hb_006469_100 Hb_000574_060 Hb_000574_060 Hb_141016_010--Hb_000574_060 Hb_027802_030 Hb_027802_030 Hb_141016_010--Hb_027802_030 Hb_009711_060 Hb_009711_060 Hb_141016_010--Hb_009711_060 Hb_004375_090--Hb_001104_030 Hb_004375_090--Hb_009711_060 Hb_151697_010 Hb_151697_010 Hb_004375_090--Hb_151697_010 Hb_183658_010 Hb_183658_010 Hb_004375_090--Hb_183658_010 Hb_004375_090--Hb_006469_100 Hb_001104_030--Hb_009711_060 Hb_001104_030--Hb_151697_010 Hb_001104_030--Hb_183658_010 Hb_002106_020 Hb_002106_020 Hb_001104_030--Hb_002106_020 Hb_006469_100--Hb_000574_060 Hb_006469_100--Hb_027802_030 Hb_168078_010 Hb_168078_010 Hb_006469_100--Hb_168078_010 Hb_003363_100 Hb_003363_100 Hb_006469_100--Hb_003363_100 Hb_000506_060 Hb_000506_060 Hb_006469_100--Hb_000506_060 Hb_000574_060--Hb_027802_030 Hb_000574_060--Hb_168078_010 Hb_000574_060--Hb_003363_100 Hb_000574_060--Hb_000506_060 Hb_027802_030--Hb_168078_010 Hb_027802_030--Hb_003363_100 Hb_027802_030--Hb_000506_060 Hb_009711_060--Hb_151697_010 Hb_009711_060--Hb_183658_010 Hb_009711_060--Hb_002106_020 Hb_000556_210 Hb_000556_210 Hb_009711_060--Hb_000556_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 11.2458 7.75876 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis