Hb_002106_020

Information

Type -
Description -
Location Contig2106: 56123-57771
Sequence    

Annotation

kegg
ID vvi:100241662
description gibberellic acid methyltransferase 2
nr
ID XP_010651418.1
description PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
swissprot
ID Q5XF78
description Gibberellic acid methyltransferase 2 OS=Arabidopsis thaliana GN=GAMT2 PE=1 SV=1
trembl
ID D7SLP8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00030 PE=4 SV=1
Gene Ontology
ID GO:0008168
description gibberellic acid methyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21785: 56944-57455 , PASA_asmbl_21786: 57546-57702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002106_020 0.0 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
2 Hb_000556_210 0.0025862646 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
3 Hb_183658_010 0.0029543331 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_151697_010 0.0040587321 - - clathrin assembly protein, putative [Ricinus communis]
5 Hb_009711_060 0.0043202496 - - -
6 Hb_002284_140 0.0076851498 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
7 Hb_004092_020 0.0080822453 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
8 Hb_001104_030 0.0112640016 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
9 Hb_004375_090 0.0145269461 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
10 Hb_000053_140 0.0176580199 - - conserved hypothetical protein [Ricinus communis]
11 Hb_141016_010 0.0179513473 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
12 Hb_005663_020 0.0217338674 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
13 Hb_001645_080 0.0222623028 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
14 Hb_001488_170 0.0242601952 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
15 Hb_006469_100 0.0264358672 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
16 Hb_000760_090 0.0277120087 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
17 Hb_005065_090 0.0279532259 - - zinc/iron transporter, putative [Ricinus communis]
18 Hb_000574_060 0.0279807197 - - hypothetical protein F775_19731 [Aegilops tauschii]
19 Hb_027802_030 0.0290434632 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
20 Hb_168078_010 0.0317352074 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]

Gene co-expression network

sample Hb_002106_020 Hb_002106_020 Hb_000556_210 Hb_000556_210 Hb_002106_020--Hb_000556_210 Hb_183658_010 Hb_183658_010 Hb_002106_020--Hb_183658_010 Hb_151697_010 Hb_151697_010 Hb_002106_020--Hb_151697_010 Hb_009711_060 Hb_009711_060 Hb_002106_020--Hb_009711_060 Hb_002284_140 Hb_002284_140 Hb_002106_020--Hb_002284_140 Hb_004092_020 Hb_004092_020 Hb_002106_020--Hb_004092_020 Hb_000556_210--Hb_002284_140 Hb_000556_210--Hb_004092_020 Hb_000556_210--Hb_183658_010 Hb_000556_210--Hb_151697_010 Hb_000556_210--Hb_009711_060 Hb_183658_010--Hb_151697_010 Hb_183658_010--Hb_009711_060 Hb_001104_030 Hb_001104_030 Hb_183658_010--Hb_001104_030 Hb_183658_010--Hb_002284_140 Hb_151697_010--Hb_009711_060 Hb_151697_010--Hb_001104_030 Hb_004375_090 Hb_004375_090 Hb_151697_010--Hb_004375_090 Hb_009711_060--Hb_001104_030 Hb_009711_060--Hb_004375_090 Hb_002284_140--Hb_004092_020 Hb_000053_140 Hb_000053_140 Hb_002284_140--Hb_000053_140 Hb_002284_140--Hb_151697_010 Hb_004092_020--Hb_000053_140 Hb_004092_020--Hb_183658_010 Hb_004092_020--Hb_151697_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.751651 0.564983 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis