Hb_151697_010

Information

Type -
Description -
Location Contig151697: 22079-24273
Sequence    

Annotation

kegg
ID rcu:RCOM_1375710
description clathrin assembly protein, putative (EC:1.3.1.74)
nr
ID XP_002523765.1
description clathrin assembly protein, putative [Ricinus communis]
swissprot
ID Q9SA65
description Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1
trembl
ID B9SCP6
description Clathrin assembly protein, putative OS=Ricinus communis GN=RCOM_1375710 PE=4 SV=1
Gene Ontology
ID GO:0030136
description clathrin assembly protein at1g03050

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151697_010 0.0 - - clathrin assembly protein, putative [Ricinus communis]
2 Hb_009711_060 0.0002615192 - - -
3 Hb_183658_010 0.0011044037 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_002106_020 0.0040587321 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
5 Hb_000556_210 0.0066449714 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
6 Hb_001104_030 0.0072053892 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
7 Hb_004375_090 0.0104684387 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
8 Hb_002284_140 0.0117437499 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
9 Hb_004092_020 0.0121408339 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
10 Hb_141016_010 0.0138929842 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
11 Hb_000053_140 0.0217161937 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006469_100 0.0223780141 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
13 Hb_000574_060 0.023922983 - - hypothetical protein F775_19731 [Aegilops tauschii]
14 Hb_027802_030 0.0249858108 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
15 Hb_005663_020 0.0257917847 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
16 Hb_001645_080 0.0263201833 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
17 Hb_168078_010 0.0276777841 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
18 Hb_001488_170 0.0283179297 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
19 Hb_003363_100 0.0307050711 - - -
20 Hb_000760_090 0.0317694641 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]

Gene co-expression network

sample Hb_151697_010 Hb_151697_010 Hb_009711_060 Hb_009711_060 Hb_151697_010--Hb_009711_060 Hb_183658_010 Hb_183658_010 Hb_151697_010--Hb_183658_010 Hb_002106_020 Hb_002106_020 Hb_151697_010--Hb_002106_020 Hb_000556_210 Hb_000556_210 Hb_151697_010--Hb_000556_210 Hb_001104_030 Hb_001104_030 Hb_151697_010--Hb_001104_030 Hb_004375_090 Hb_004375_090 Hb_151697_010--Hb_004375_090 Hb_009711_060--Hb_183658_010 Hb_009711_060--Hb_002106_020 Hb_009711_060--Hb_000556_210 Hb_009711_060--Hb_001104_030 Hb_009711_060--Hb_004375_090 Hb_183658_010--Hb_002106_020 Hb_183658_010--Hb_000556_210 Hb_183658_010--Hb_001104_030 Hb_002284_140 Hb_002284_140 Hb_183658_010--Hb_002284_140 Hb_002106_020--Hb_000556_210 Hb_002106_020--Hb_002284_140 Hb_004092_020 Hb_004092_020 Hb_002106_020--Hb_004092_020 Hb_000556_210--Hb_002284_140 Hb_000556_210--Hb_004092_020 Hb_001104_030--Hb_004375_090 Hb_141016_010 Hb_141016_010 Hb_001104_030--Hb_141016_010 Hb_001104_030--Hb_002106_020 Hb_004375_090--Hb_141016_010 Hb_004375_090--Hb_183658_010 Hb_006469_100 Hb_006469_100 Hb_004375_090--Hb_006469_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0355084 0.0261793 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis