Hb_168078_010

Information

Type -
Description -
Location Contig168078: 208-882
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11290g
description POPTRDRAFT_572581; hypothetical protein
nr
ID XP_012066602.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
swissprot
ID Q9SZL5
description Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1
trembl
ID A0A067KLV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13512 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168078_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
2 Hb_027802_030 0.002692668 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
3 Hb_003363_100 0.0030282505 - - -
4 Hb_000574_060 0.0037557283 - - hypothetical protein F775_19731 [Aegilops tauschii]
5 Hb_006469_100 0.005300993 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
6 Hb_000506_060 0.0053892248 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
7 Hb_007524_020 0.0089924356 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
8 Hb_001300_110 0.0112113935 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
9 Hb_000243_270 0.0122422303 - - Pectinesterase-2 precursor, putative [Ricinus communis]
10 Hb_141016_010 0.0137867651 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
11 Hb_064476_010 0.0162645311 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
12 Hb_004375_090 0.0172111905 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
13 Hb_013607_020 0.0202628084 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
14 Hb_001104_030 0.0204739028 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
15 Hb_166937_010 0.0218638707 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
16 Hb_000771_010 0.026011077 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_009711_060 0.0274163379 - - -
18 Hb_151697_010 0.0276777841 - - clathrin assembly protein, putative [Ricinus communis]
19 Hb_183658_010 0.0287818643 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_001579_080 0.0299428732 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_168078_010 Hb_168078_010 Hb_027802_030 Hb_027802_030 Hb_168078_010--Hb_027802_030 Hb_003363_100 Hb_003363_100 Hb_168078_010--Hb_003363_100 Hb_000574_060 Hb_000574_060 Hb_168078_010--Hb_000574_060 Hb_006469_100 Hb_006469_100 Hb_168078_010--Hb_006469_100 Hb_000506_060 Hb_000506_060 Hb_168078_010--Hb_000506_060 Hb_007524_020 Hb_007524_020 Hb_168078_010--Hb_007524_020 Hb_027802_030--Hb_000574_060 Hb_027802_030--Hb_006469_100 Hb_027802_030--Hb_003363_100 Hb_027802_030--Hb_000506_060 Hb_141016_010 Hb_141016_010 Hb_027802_030--Hb_141016_010 Hb_003363_100--Hb_000506_060 Hb_003363_100--Hb_007524_020 Hb_003363_100--Hb_000574_060 Hb_001300_110 Hb_001300_110 Hb_003363_100--Hb_001300_110 Hb_000574_060--Hb_006469_100 Hb_000574_060--Hb_000506_060 Hb_000574_060--Hb_141016_010 Hb_006469_100--Hb_003363_100 Hb_006469_100--Hb_141016_010 Hb_006469_100--Hb_000506_060 Hb_000506_060--Hb_007524_020 Hb_000506_060--Hb_001300_110 Hb_000243_270 Hb_000243_270 Hb_000506_060--Hb_000243_270 Hb_007524_020--Hb_001300_110 Hb_007524_020--Hb_000243_270 Hb_064476_010 Hb_064476_010 Hb_007524_020--Hb_064476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0575019 0.0371283 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis