Hb_001322_220

Information

Type -
Description -
Location Contig1322: 188283-189405
Sequence    

Annotation

kegg
ID rcu:RCOM_0120910
description Major pollen allergen Ory s 1 precursor, putative
nr
ID XP_002531220.1
description Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
swissprot
ID O23547
description Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2
trembl
ID B9SZ01
description Major pollen allergen Ory s 1, putative OS=Ricinus communis GN=RCOM_0120910 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-like b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09290: 188087-189470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001322_220 0.0 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
2 Hb_001190_030 0.0190556028 - - hypothetical protein VITISV_017115 [Vitis vinifera]
3 Hb_022845_010 0.0554637364 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
4 Hb_000185_190 0.0817678031 - - hypothetical protein L484_017526 [Morus notabilis]
5 Hb_015754_010 0.0817891169 - - Galactose oxidase precursor, putative [Ricinus communis]
6 Hb_001031_130 0.0818456743 - - zinc finger protein, putative [Ricinus communis]
7 Hb_002081_110 0.0818497118 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
8 Hb_001579_080 0.0818609046 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_171420_010 0.08200239 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
10 Hb_000042_410 0.082075828 - - Patatin precursor, putative [Ricinus communis]
11 Hb_014549_030 0.0821223641 - - receptor-kinase, putative [Ricinus communis]
12 Hb_000771_010 0.082142032 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_004994_270 0.0822035028 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
14 Hb_166937_010 0.0826391769 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
15 Hb_013607_020 0.0828854677 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
16 Hb_064476_010 0.0836303648 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
17 Hb_002986_150 0.0836797177 - - hypothetical protein glysoja_022060 [Glycine soja]
18 Hb_001728_090 0.0842176443 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
19 Hb_000243_270 0.0845626792 - - Pectinesterase-2 precursor, putative [Ricinus communis]
20 Hb_001300_110 0.0848304396 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001322_220 Hb_001322_220 Hb_001190_030 Hb_001190_030 Hb_001322_220--Hb_001190_030 Hb_022845_010 Hb_022845_010 Hb_001322_220--Hb_022845_010 Hb_000185_190 Hb_000185_190 Hb_001322_220--Hb_000185_190 Hb_015754_010 Hb_015754_010 Hb_001322_220--Hb_015754_010 Hb_001031_130 Hb_001031_130 Hb_001322_220--Hb_001031_130 Hb_002081_110 Hb_002081_110 Hb_001322_220--Hb_002081_110 Hb_001190_030--Hb_022845_010 Hb_002986_150 Hb_002986_150 Hb_001190_030--Hb_002986_150 Hb_001728_090 Hb_001728_090 Hb_001190_030--Hb_001728_090 Hb_003549_110 Hb_003549_110 Hb_001190_030--Hb_003549_110 Hb_004712_120 Hb_004712_120 Hb_001190_030--Hb_004712_120 Hb_000654_060 Hb_000654_060 Hb_022845_010--Hb_000654_060 Hb_120289_010 Hb_120289_010 Hb_022845_010--Hb_120289_010 Hb_152528_010 Hb_152528_010 Hb_022845_010--Hb_152528_010 Hb_000162_160 Hb_000162_160 Hb_022845_010--Hb_000162_160 Hb_000185_190--Hb_015754_010 Hb_001579_080 Hb_001579_080 Hb_000185_190--Hb_001579_080 Hb_000185_190--Hb_001031_130 Hb_000185_190--Hb_002081_110 Hb_171420_010 Hb_171420_010 Hb_000185_190--Hb_171420_010 Hb_000771_010 Hb_000771_010 Hb_000185_190--Hb_000771_010 Hb_015754_010--Hb_001579_080 Hb_015754_010--Hb_001031_130 Hb_015754_010--Hb_002081_110 Hb_015754_010--Hb_000771_010 Hb_015754_010--Hb_171420_010 Hb_001031_130--Hb_002081_110 Hb_001031_130--Hb_171420_010 Hb_000042_410 Hb_000042_410 Hb_001031_130--Hb_000042_410 Hb_014549_030 Hb_014549_030 Hb_001031_130--Hb_014549_030 Hb_004994_270 Hb_004994_270 Hb_001031_130--Hb_004994_270 Hb_002081_110--Hb_171420_010 Hb_002081_110--Hb_000042_410 Hb_002081_110--Hb_014549_030 Hb_002081_110--Hb_004994_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.108683 5.20754 2.85091 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis