Hb_162378_020

Information

Type transcription factor
Description TF Family: HMG
Location Contig162378: 2782-5088
Sequence    

Annotation

kegg
ID rcu:RCOM_1691260
description transcription factor, putative
nr
ID XP_011022536.1
description PREDICTED: high mobility group B protein 13-like [Populus euphratica]
swissprot
ID Q9T012
description High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13 PE=2 SV=1
trembl
ID B9RCQ0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1691260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14743: 2811-5242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162378_020 0.0 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
2 Hb_001220_020 0.0501053323 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
3 Hb_011063_030 0.0502820851 - - protein with unknown function [Ricinus communis]
4 Hb_000032_080 0.0553185763 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
5 Hb_004032_390 0.0555741105 - - CDK, putative [Ricinus communis]
6 Hb_064396_010 0.056471392 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002686_070 0.0592473197 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001235_040 0.0645596553 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
9 Hb_003398_050 0.0695418191 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
10 Hb_119044_040 0.0768208056 - - cyclin B, putative [Ricinus communis]
11 Hb_000227_020 0.0782126023 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
12 Hb_011849_010 0.0817907911 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
13 Hb_003776_050 0.0828059885 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
14 Hb_002473_030 0.083039645 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
15 Hb_007044_260 0.0840090666 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
16 Hb_000035_190 0.0861750426 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003018_210 0.0871710816 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
18 Hb_002928_150 0.0889533709 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
19 Hb_000614_200 0.0890124343 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
20 Hb_005649_050 0.0897235697 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_162378_020 Hb_162378_020 Hb_001220_020 Hb_001220_020 Hb_162378_020--Hb_001220_020 Hb_011063_030 Hb_011063_030 Hb_162378_020--Hb_011063_030 Hb_000032_080 Hb_000032_080 Hb_162378_020--Hb_000032_080 Hb_004032_390 Hb_004032_390 Hb_162378_020--Hb_004032_390 Hb_064396_010 Hb_064396_010 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_004032_390 Hb_004174_030 Hb_004174_030 Hb_001220_020--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_011063_030--Hb_001235_040 Hb_011063_030--Hb_000032_080 Hb_011063_030--Hb_001220_020 Hb_011063_030--Hb_064396_010 Hb_000227_020 Hb_000227_020 Hb_011063_030--Hb_000227_020 Hb_000032_080--Hb_001220_020 Hb_000032_080--Hb_064396_010 Hb_000032_080--Hb_002686_070 Hb_007044_260 Hb_007044_260 Hb_000032_080--Hb_007044_260 Hb_004032_390--Hb_003398_050 Hb_003776_050 Hb_003776_050 Hb_004032_390--Hb_003776_050 Hb_004032_390--Hb_002928_150 Hb_004032_390--Hb_004174_030 Hb_064396_010--Hb_002686_070 Hb_064396_010--Hb_000227_020 Hb_064396_010--Hb_001220_020 Hb_002686_070--Hb_004032_390 Hb_119044_040 Hb_119044_040 Hb_002686_070--Hb_119044_040 Hb_002686_070--Hb_001220_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.174638 1.01954 71.7226 18.6795 0.0252149 0.0488633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0306642 0.0482491 0 5.37213 2.07062

CAGE analysis