Hb_001235_040

Information

Type -
Description -
Location Contig1235: 109919-111196
Sequence    

Annotation

kegg
ID pop:POPTR_0001s47470g
description POPTRDRAFT_642694; hypothetical protein
nr
ID XP_002299072.1
description hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GHJ2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s47470g PE=4 SV=1
Gene Ontology
ID GO:0003746
description rna polymerase ii elongation factor ell3 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_040 0.0 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
2 Hb_006788_130 0.052062743 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
3 Hb_000084_230 0.0566806721 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
4 Hb_011063_030 0.0577233975 - - protein with unknown function [Ricinus communis]
5 Hb_162378_020 0.0645596553 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
6 Hb_001220_020 0.0662892737 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
7 Hb_001564_100 0.0698239055 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
8 Hb_064396_010 0.0858496074 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000032_080 0.0895072874 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
10 Hb_003398_050 0.0911249592 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
11 Hb_004032_390 0.0923029839 - - CDK, putative [Ricinus communis]
12 Hb_004174_030 0.0925868309 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
13 Hb_003018_210 0.0948346529 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
14 Hb_005649_050 0.0951814538 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002473_030 0.0967679902 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
16 Hb_000227_020 0.0974813391 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
17 Hb_002837_030 0.1049278963 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000035_190 0.1054466017 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008406_150 0.1057170937 - - PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Jatropha curcas]
20 Hb_001210_030 0.1061927641 - - PREDICTED: plectin [Jatropha curcas]

Gene co-expression network

sample Hb_001235_040 Hb_001235_040 Hb_006788_130 Hb_006788_130 Hb_001235_040--Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_001235_040--Hb_000084_230 Hb_011063_030 Hb_011063_030 Hb_001235_040--Hb_011063_030 Hb_162378_020 Hb_162378_020 Hb_001235_040--Hb_162378_020 Hb_001220_020 Hb_001220_020 Hb_001235_040--Hb_001220_020 Hb_001564_100 Hb_001564_100 Hb_001235_040--Hb_001564_100 Hb_006788_130--Hb_000084_230 Hb_006788_130--Hb_001564_100 Hb_006788_130--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_006788_130--Hb_004174_030 Hb_003018_210 Hb_003018_210 Hb_006788_130--Hb_003018_210 Hb_000084_230--Hb_001564_100 Hb_000084_230--Hb_004174_030 Hb_000084_230--Hb_001220_020 Hb_028995_020 Hb_028995_020 Hb_000084_230--Hb_028995_020 Hb_011063_030--Hb_162378_020 Hb_000032_080 Hb_000032_080 Hb_011063_030--Hb_000032_080 Hb_011063_030--Hb_001220_020 Hb_064396_010 Hb_064396_010 Hb_011063_030--Hb_064396_010 Hb_000227_020 Hb_000227_020 Hb_011063_030--Hb_000227_020 Hb_162378_020--Hb_001220_020 Hb_162378_020--Hb_000032_080 Hb_004032_390 Hb_004032_390 Hb_162378_020--Hb_004032_390 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_001220_020--Hb_002928_150 Hb_001564_100--Hb_001220_020 Hb_011859_010 Hb_011859_010 Hb_001564_100--Hb_011859_010 Hb_006332_030 Hb_006332_030 Hb_001564_100--Hb_006332_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.042279 0.338382 40.5614 8.50144 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.91137 0.780584

CAGE analysis