Hb_002686_070

Information

Type -
Description -
Location Contig2686: 41114-43321
Sequence    

Annotation

kegg
ID rcu:RCOM_1121760
description hypothetical protein
nr
ID XP_002525438.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHG9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1121760 PE=4 SV=1
Gene Ontology
ID GO:0005681
description arm repeat superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27993: 40978-42170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_064396_010 0.0572595813 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_162378_020 0.0592473197 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
4 Hb_004032_390 0.0696285938 - - CDK, putative [Ricinus communis]
5 Hb_119044_040 0.0699013577 - - cyclin B, putative [Ricinus communis]
6 Hb_001220_020 0.076369288 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
7 Hb_000032_080 0.0777459881 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
8 Hb_011849_010 0.0825262046 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
9 Hb_000227_020 0.082922374 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
10 Hb_027905_040 0.0845553909 transcription factor TF Family: E2F-DP PREDICTED: E2F transcription factor-like E2FF [Jatropha curcas]
11 Hb_007044_260 0.085364795 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
12 Hb_000614_200 0.0866315803 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
13 Hb_002374_090 0.087373057 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
14 Hb_000316_070 0.0875652753 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
15 Hb_003776_050 0.0882927027 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
16 Hb_003398_050 0.0888104241 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
17 Hb_011063_030 0.0893763822 - - protein with unknown function [Ricinus communis]
18 Hb_001699_070 0.0905601719 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004631_040 0.0920679149 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
20 Hb_000421_060 0.0948052614 - - PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_070 Hb_002686_070 Hb_064396_010 Hb_064396_010 Hb_002686_070--Hb_064396_010 Hb_162378_020 Hb_162378_020 Hb_002686_070--Hb_162378_020 Hb_004032_390 Hb_004032_390 Hb_002686_070--Hb_004032_390 Hb_119044_040 Hb_119044_040 Hb_002686_070--Hb_119044_040 Hb_001220_020 Hb_001220_020 Hb_002686_070--Hb_001220_020 Hb_000032_080 Hb_000032_080 Hb_002686_070--Hb_000032_080 Hb_064396_010--Hb_162378_020 Hb_000227_020 Hb_000227_020 Hb_064396_010--Hb_000227_020 Hb_064396_010--Hb_001220_020 Hb_064396_010--Hb_000032_080 Hb_011063_030 Hb_011063_030 Hb_064396_010--Hb_011063_030 Hb_162378_020--Hb_001220_020 Hb_162378_020--Hb_011063_030 Hb_162378_020--Hb_000032_080 Hb_162378_020--Hb_004032_390 Hb_004032_390--Hb_001220_020 Hb_003398_050 Hb_003398_050 Hb_004032_390--Hb_003398_050 Hb_003776_050 Hb_003776_050 Hb_004032_390--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_004032_390--Hb_002928_150 Hb_004174_030 Hb_004174_030 Hb_004032_390--Hb_004174_030 Hb_119044_040--Hb_003776_050 Hb_001279_110 Hb_001279_110 Hb_119044_040--Hb_001279_110 Hb_000085_360 Hb_000085_360 Hb_119044_040--Hb_000085_360 Hb_004631_040 Hb_004631_040 Hb_119044_040--Hb_004631_040 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_004174_030 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_000032_080--Hb_011063_030 Hb_000032_080--Hb_001220_020 Hb_007044_260 Hb_007044_260 Hb_000032_080--Hb_007044_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.155765 7.03238 2.10689 0.0103722 0.0107863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0251956 0 0 0.67105 0.250596

CAGE analysis