Hb_011849_010

Information

Type -
Description -
Location Contig11849: 2570-8321
Sequence    

Annotation

kegg
ID rcu:RCOM_0477810
description ATP binding protein, putative
nr
ID XP_012089512.1
description PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
swissprot
ID Q9BVG8
description Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4
trembl
ID B9T3K9
description Kinesin-like protein OS=Ricinus communis GN=RCOM_0477810 PE=3 SV=1
Gene Ontology
ID GO:0015630
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05484: 2630-7219 , PASA_asmbl_05485: 4425-7219 , PASA_asmbl_05486: 7251-7877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011849_010 0.0 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
2 Hb_000614_200 0.0475162861 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
3 Hb_003776_050 0.0558704328 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
4 Hb_002374_090 0.0581806866 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
5 Hb_000038_070 0.0591354999 - - conserved hypothetical protein [Ricinus communis]
6 Hb_119044_040 0.05967643 - - cyclin B, putative [Ricinus communis]
7 Hb_000316_070 0.0606518834 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
8 Hb_001279_110 0.0630944747 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
9 Hb_000085_360 0.067504127 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
10 Hb_004032_390 0.0688722156 - - CDK, putative [Ricinus communis]
11 Hb_007245_030 0.0728907503 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002928_150 0.0747557326 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
13 Hb_001998_180 0.0747828075 - - actin binding protein, putative [Ricinus communis]
14 Hb_000060_030 0.0754981868 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
15 Hb_080952_060 0.0756817082 - - PREDICTED: patellin-4 [Populus euphratica]
16 Hb_001969_120 0.0757496545 - - PREDICTED: plectin [Jatropha curcas]
17 Hb_003398_050 0.0762970112 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
18 Hb_001220_020 0.076993392 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
19 Hb_006520_030 0.0776794381 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
20 Hb_181744_010 0.078648687 - - hypothetical protein JCGZ_06105 [Jatropha curcas]

Gene co-expression network

sample Hb_011849_010 Hb_011849_010 Hb_000614_200 Hb_000614_200 Hb_011849_010--Hb_000614_200 Hb_003776_050 Hb_003776_050 Hb_011849_010--Hb_003776_050 Hb_002374_090 Hb_002374_090 Hb_011849_010--Hb_002374_090 Hb_000038_070 Hb_000038_070 Hb_011849_010--Hb_000038_070 Hb_119044_040 Hb_119044_040 Hb_011849_010--Hb_119044_040 Hb_000316_070 Hb_000316_070 Hb_011849_010--Hb_000316_070 Hb_000614_200--Hb_003776_050 Hb_007245_030 Hb_007245_030 Hb_000614_200--Hb_007245_030 Hb_000614_200--Hb_002374_090 Hb_000614_200--Hb_119044_040 Hb_003398_050 Hb_003398_050 Hb_000614_200--Hb_003398_050 Hb_001969_120 Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_003776_050--Hb_119044_040 Hb_003776_050--Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_002374_090--Hb_119044_040 Hb_002374_090--Hb_003776_050 Hb_002374_090--Hb_000038_070 Hb_002374_090--Hb_000316_070 Hb_000085_360 Hb_000085_360 Hb_000038_070--Hb_000085_360 Hb_000856_390 Hb_000856_390 Hb_000038_070--Hb_000856_390 Hb_181744_010 Hb_181744_010 Hb_000038_070--Hb_181744_010 Hb_003106_090 Hb_003106_090 Hb_000038_070--Hb_003106_090 Hb_001279_110 Hb_001279_110 Hb_119044_040--Hb_001279_110 Hb_119044_040--Hb_000085_360 Hb_004631_040 Hb_004631_040 Hb_119044_040--Hb_004631_040 Hb_119044_040--Hb_001969_120 Hb_004635_020 Hb_004635_020 Hb_000316_070--Hb_004635_020 Hb_004963_020 Hb_004963_020 Hb_000316_070--Hb_004963_020 Hb_000316_070--Hb_000614_200 Hb_004032_390 Hb_004032_390 Hb_000316_070--Hb_004032_390 Hb_000316_070--Hb_007245_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0185039 0.18915 6.89928 2.53882 0 0.00499201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0203953 0 0.517413 0.392361

CAGE analysis