Hb_004635_020

Information

Type -
Description -
Location Contig4635: 11627-14304
Sequence    

Annotation

kegg
ID rcu:RCOM_0292770
description hypothetical protein
nr
ID XP_012066749.1
description PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
swissprot
ID Q9FLE8
description Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
trembl
ID B9SWF0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0292770 PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_020 0.0 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
2 Hb_000316_070 0.0634504169 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
3 Hb_000856_390 0.0846819998 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000085_360 0.0848709187 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
5 Hb_080952_060 0.0854217261 - - PREDICTED: patellin-4 [Populus euphratica]
6 Hb_119044_040 0.0869253154 - - cyclin B, putative [Ricinus communis]
7 Hb_007245_030 0.0869623689 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011849_010 0.0875583555 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
9 Hb_001864_040 0.0879419783 - - PREDICTED: kinesin-1 [Jatropha curcas]
10 Hb_002374_090 0.0885127132 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
11 Hb_001699_070 0.088960482 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001998_180 0.0893118068 - - actin binding protein, putative [Ricinus communis]
13 Hb_001168_030 0.0905159323 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
14 Hb_000038_070 0.0915333775 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003776_050 0.0926621364 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
16 Hb_000060_030 0.0929104462 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
17 Hb_004963_020 0.093334067 - - PREDICTED: patellin-4 [Populus euphratica]
18 Hb_000614_200 0.0949185288 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
19 Hb_005276_090 0.09636804 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
20 Hb_000189_350 0.0967518389 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004635_020 Hb_004635_020 Hb_000316_070 Hb_000316_070 Hb_004635_020--Hb_000316_070 Hb_000856_390 Hb_000856_390 Hb_004635_020--Hb_000856_390 Hb_000085_360 Hb_000085_360 Hb_004635_020--Hb_000085_360 Hb_080952_060 Hb_080952_060 Hb_004635_020--Hb_080952_060 Hb_119044_040 Hb_119044_040 Hb_004635_020--Hb_119044_040 Hb_007245_030 Hb_007245_030 Hb_004635_020--Hb_007245_030 Hb_011849_010 Hb_011849_010 Hb_000316_070--Hb_011849_010 Hb_004963_020 Hb_004963_020 Hb_000316_070--Hb_004963_020 Hb_000614_200 Hb_000614_200 Hb_000316_070--Hb_000614_200 Hb_004032_390 Hb_004032_390 Hb_000316_070--Hb_004032_390 Hb_000316_070--Hb_007245_030 Hb_001307_150 Hb_001307_150 Hb_000856_390--Hb_001307_150 Hb_016898_020 Hb_016898_020 Hb_000856_390--Hb_016898_020 Hb_000038_070 Hb_000038_070 Hb_000856_390--Hb_000038_070 Hb_000856_390--Hb_007245_030 Hb_000480_060 Hb_000480_060 Hb_000856_390--Hb_000480_060 Hb_000856_390--Hb_000085_360 Hb_000085_360--Hb_119044_040 Hb_004631_040 Hb_004631_040 Hb_000085_360--Hb_004631_040 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_001279_110 Hb_001279_110 Hb_000085_360--Hb_001279_110 Hb_000085_360--Hb_000038_070 Hb_000085_360--Hb_080952_060 Hb_001998_180 Hb_001998_180 Hb_080952_060--Hb_001998_180 Hb_003776_050 Hb_003776_050 Hb_080952_060--Hb_003776_050 Hb_080952_060--Hb_119044_040 Hb_080952_060--Hb_001279_110 Hb_000060_030 Hb_000060_030 Hb_080952_060--Hb_000060_030 Hb_119044_040--Hb_003776_050 Hb_119044_040--Hb_001279_110 Hb_119044_040--Hb_004631_040 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_119044_040--Hb_011849_010 Hb_005914_100 Hb_005914_100 Hb_007245_030--Hb_005914_100 Hb_007245_030--Hb_000614_200 Hb_001168_030 Hb_001168_030 Hb_007245_030--Hb_001168_030 Hb_002928_150 Hb_002928_150 Hb_007245_030--Hb_002928_150 Hb_004225_160 Hb_004225_160 Hb_007245_030--Hb_004225_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0742543 0.277134 8.59986 3.60204 0.107026 0.0266806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0322692 0 0 0.679204 0.477414

CAGE analysis