Hb_001998_180

Information

Type -
Description -
Location Contig1998: 199747-204388
Sequence    

Annotation

kegg
ID rcu:RCOM_0237720
description actin binding protein, putative
nr
ID XP_002533785.1
description actin binding protein, putative [Ricinus communis]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID B9T6B3
description Actin binding protein, putative OS=Ricinus communis GN=RCOM_0237720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20000: 199402-201690 , PASA_asmbl_20001: 201742-202282 , PASA_asmbl_20002: 203674-203890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_180 0.0 - - actin binding protein, putative [Ricinus communis]
2 Hb_000060_030 0.0500892727 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
3 Hb_080952_060 0.0520717181 - - PREDICTED: patellin-4 [Populus euphratica]
4 Hb_000116_050 0.0586358471 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
5 Hb_001279_110 0.0665471881 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
6 Hb_003776_050 0.0674025667 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
7 Hb_000085_360 0.0701843081 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
8 Hb_011849_010 0.0747828075 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
9 Hb_001541_140 0.0757423779 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
10 Hb_119044_040 0.0766098183 - - cyclin B, putative [Ricinus communis]
11 Hb_181744_010 0.0785463958 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_002928_150 0.0790136642 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
13 Hb_000614_200 0.0794671316 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
14 Hb_012395_040 0.0796104352 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006520_030 0.0829428452 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
16 Hb_004032_390 0.0836927702 - - CDK, putative [Ricinus communis]
17 Hb_009113_060 0.0837659295 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005276_090 0.0837946415 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
19 Hb_001969_120 0.0846157866 - - PREDICTED: plectin [Jatropha curcas]
20 Hb_000340_550 0.0848951913 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001998_180 Hb_001998_180 Hb_000060_030 Hb_000060_030 Hb_001998_180--Hb_000060_030 Hb_080952_060 Hb_080952_060 Hb_001998_180--Hb_080952_060 Hb_000116_050 Hb_000116_050 Hb_001998_180--Hb_000116_050 Hb_001279_110 Hb_001279_110 Hb_001998_180--Hb_001279_110 Hb_003776_050 Hb_003776_050 Hb_001998_180--Hb_003776_050 Hb_000085_360 Hb_000085_360 Hb_001998_180--Hb_000085_360 Hb_000060_030--Hb_000116_050 Hb_000060_030--Hb_001279_110 Hb_000060_030--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_000060_030--Hb_002928_150 Hb_012395_040 Hb_012395_040 Hb_000060_030--Hb_012395_040 Hb_080952_060--Hb_003776_050 Hb_119044_040 Hb_119044_040 Hb_080952_060--Hb_119044_040 Hb_080952_060--Hb_000085_360 Hb_080952_060--Hb_001279_110 Hb_080952_060--Hb_000060_030 Hb_000116_050--Hb_012395_040 Hb_000116_050--Hb_001279_110 Hb_009113_060 Hb_009113_060 Hb_000116_050--Hb_009113_060 Hb_000116_050--Hb_002928_150 Hb_001279_110--Hb_119044_040 Hb_001279_110--Hb_012395_040 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_001969_120 Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_003776_050--Hb_119044_040 Hb_003398_050 Hb_003398_050 Hb_003776_050--Hb_003398_050 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_003776_050--Hb_002928_150 Hb_000085_360--Hb_119044_040 Hb_004631_040 Hb_004631_040 Hb_000085_360--Hb_004631_040 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_000085_360--Hb_001279_110 Hb_000038_070 Hb_000038_070 Hb_000085_360--Hb_000038_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0692189 4.7873 2.14911 0.0076991 0.015541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0186739 0.014694 0 0.361911 0.343164

CAGE analysis