Hb_080952_060

Information

Type -
Description -
Location Contig80952: 48496-50412
Sequence    

Annotation

kegg
ID rcu:RCOM_1334760
description Patellin-4, putative
nr
ID XP_011039291.1
description PREDICTED: patellin-4 [Populus euphratica]
swissprot
ID Q94C59
description Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2
trembl
ID B9SAY7
description Patellin-4, putative OS=Ricinus communis GN=RCOM_1334760 PE=4 SV=1
Gene Ontology
ID GO:0005634
description patellin-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59190: 48326-50439
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080952_060 0.0 - - PREDICTED: patellin-4 [Populus euphratica]
2 Hb_001998_180 0.0520717181 - - actin binding protein, putative [Ricinus communis]
3 Hb_003776_050 0.0599542956 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
4 Hb_119044_040 0.0650812719 - - cyclin B, putative [Ricinus communis]
5 Hb_000085_360 0.067402141 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
6 Hb_001279_110 0.0686575121 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
7 Hb_000060_030 0.0710562741 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
8 Hb_004032_390 0.0716035111 - - CDK, putative [Ricinus communis]
9 Hb_002928_150 0.0750969951 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
10 Hb_011849_010 0.0756817082 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
11 Hb_001541_140 0.0758593994 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
12 Hb_001969_120 0.0758615023 - - PREDICTED: plectin [Jatropha curcas]
13 Hb_000116_050 0.0762512923 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
14 Hb_001307_150 0.0789131091 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_001699_070 0.0791591392 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003398_050 0.0819445575 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
17 Hb_000614_200 0.0823522279 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
18 Hb_005276_090 0.0828674711 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
19 Hb_003368_070 0.0835202127 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
20 Hb_004635_020 0.0854217261 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]

Gene co-expression network

sample Hb_080952_060 Hb_080952_060 Hb_001998_180 Hb_001998_180 Hb_080952_060--Hb_001998_180 Hb_003776_050 Hb_003776_050 Hb_080952_060--Hb_003776_050 Hb_119044_040 Hb_119044_040 Hb_080952_060--Hb_119044_040 Hb_000085_360 Hb_000085_360 Hb_080952_060--Hb_000085_360 Hb_001279_110 Hb_001279_110 Hb_080952_060--Hb_001279_110 Hb_000060_030 Hb_000060_030 Hb_080952_060--Hb_000060_030 Hb_001998_180--Hb_000060_030 Hb_000116_050 Hb_000116_050 Hb_001998_180--Hb_000116_050 Hb_001998_180--Hb_001279_110 Hb_001998_180--Hb_003776_050 Hb_001998_180--Hb_000085_360 Hb_001969_120 Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_003776_050--Hb_119044_040 Hb_003398_050 Hb_003398_050 Hb_003776_050--Hb_003398_050 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_002928_150 Hb_002928_150 Hb_003776_050--Hb_002928_150 Hb_003776_050--Hb_000060_030 Hb_119044_040--Hb_001279_110 Hb_119044_040--Hb_000085_360 Hb_004631_040 Hb_004631_040 Hb_119044_040--Hb_004631_040 Hb_119044_040--Hb_001969_120 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010 Hb_000085_360--Hb_004631_040 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_000085_360--Hb_001279_110 Hb_000038_070 Hb_000038_070 Hb_000085_360--Hb_000038_070 Hb_001279_110--Hb_000060_030 Hb_001279_110--Hb_000116_050 Hb_012395_040 Hb_012395_040 Hb_001279_110--Hb_012395_040 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_000060_030--Hb_000116_050 Hb_000060_030--Hb_002928_150 Hb_000060_030--Hb_012395_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.348814 0.792617 75.1834 33.5032 0.0904383 0.0864463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.408545 0.321433 0.0404327 5.50863 3.96349

CAGE analysis