Hb_000480_060

Information

Type -
Description -
Location Contig480: 92053-96502
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05060g
description POPTRDRAFT_772675; hypothetical protein
nr
ID XP_012075451.1
description PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
swissprot
ID Q8S950
description Kinesin-like protein NACK1 OS=Nicotiana tabacum GN=NACK1 PE=1 SV=1
trembl
ID A0A067KG34
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_10720 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein nack1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44679: 95130-96403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000480_060 0.0 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
2 Hb_001307_150 0.0522768182 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_009113_060 0.0688294948 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001699_270 0.0699850099 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
5 Hb_006588_100 0.0701791693 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000345_450 0.0704256647 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
7 Hb_000085_360 0.0707743481 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
8 Hb_005276_090 0.0716927749 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
9 Hb_000856_390 0.0729134097 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000116_050 0.0787041437 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
11 Hb_003847_060 0.0796611486 - - syntaxin, putative [Ricinus communis]
12 Hb_016898_020 0.0799417724 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
13 Hb_004592_030 0.0804254325 - - unknown [Lotus japonicus]
14 Hb_001279_110 0.0835024852 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
15 Hb_004631_040 0.0890301583 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
16 Hb_080952_060 0.0893056691 - - PREDICTED: patellin-4 [Populus euphratica]
17 Hb_000060_030 0.089546272 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
18 Hb_003368_070 0.0901101723 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
19 Hb_003106_090 0.0904522553 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
20 Hb_119044_040 0.0915192492 - - cyclin B, putative [Ricinus communis]

Gene co-expression network

sample Hb_000480_060 Hb_000480_060 Hb_001307_150 Hb_001307_150 Hb_000480_060--Hb_001307_150 Hb_009113_060 Hb_009113_060 Hb_000480_060--Hb_009113_060 Hb_001699_270 Hb_001699_270 Hb_000480_060--Hb_001699_270 Hb_006588_100 Hb_006588_100 Hb_000480_060--Hb_006588_100 Hb_000345_450 Hb_000345_450 Hb_000480_060--Hb_000345_450 Hb_000085_360 Hb_000085_360 Hb_000480_060--Hb_000085_360 Hb_000856_390 Hb_000856_390 Hb_001307_150--Hb_000856_390 Hb_016898_020 Hb_016898_020 Hb_001307_150--Hb_016898_020 Hb_001307_150--Hb_001699_270 Hb_003847_060 Hb_003847_060 Hb_001307_150--Hb_003847_060 Hb_001307_150--Hb_000345_450 Hb_000116_050 Hb_000116_050 Hb_009113_060--Hb_000116_050 Hb_012395_040 Hb_012395_040 Hb_009113_060--Hb_012395_040 Hb_009113_060--Hb_016898_020 Hb_001279_110 Hb_001279_110 Hb_009113_060--Hb_001279_110 Hb_000060_030 Hb_000060_030 Hb_009113_060--Hb_000060_030 Hb_000661_150 Hb_000661_150 Hb_001699_270--Hb_000661_150 Hb_001950_090 Hb_001950_090 Hb_001699_270--Hb_001950_090 Hb_001699_270--Hb_003847_060 Hb_001699_270--Hb_000345_450 Hb_003656_080 Hb_003656_080 Hb_006588_100--Hb_003656_080 Hb_006588_100--Hb_001699_270 Hb_006588_100--Hb_001950_090 Hb_000140_200 Hb_000140_200 Hb_006588_100--Hb_000140_200 Hb_006588_100--Hb_000345_450 Hb_000701_020 Hb_000701_020 Hb_000345_450--Hb_000701_020 Hb_000345_450--Hb_001950_090 Hb_119044_040 Hb_119044_040 Hb_000085_360--Hb_119044_040 Hb_004631_040 Hb_004631_040 Hb_000085_360--Hb_004631_040 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_000085_360--Hb_001279_110 Hb_000038_070 Hb_000038_070 Hb_000085_360--Hb_000038_070 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0131108 0.105858 7.80497 4.73559 0 0.00572659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0116989 0.0223703 0.923505 0.449102

CAGE analysis