Hb_003656_080

Information

Type -
Description -
Location Contig3656: 81607-82752
Sequence    

Annotation

kegg
ID rcu:RCOM_1046000
description hypothetical protein
nr
ID XP_012077017.1
description PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07459 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 025_D20.ab1: 81909-82760

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_080 0.0 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
2 Hb_006588_100 0.0707877315 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004531_060 0.0791660401 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
4 Hb_005332_030 0.0826618557 - - conserved hypothetical protein [Ricinus communis]
5 Hb_020025_030 0.0857141314 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
6 Hb_001950_090 0.0865281092 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
7 Hb_000140_200 0.0900943153 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
8 Hb_003847_060 0.090768089 - - syntaxin, putative [Ricinus communis]
9 Hb_001263_030 0.1004186377 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
10 Hb_159809_040 0.1023875969 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001699_270 0.1049653267 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
12 Hb_000480_060 0.1054229237 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
13 Hb_000345_450 0.1070766972 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
14 Hb_000977_190 0.1083426378 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000317_120 0.1115983722 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
16 Hb_006810_040 0.1119770331 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_000094_230 0.1120312111 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
18 Hb_003106_090 0.1142274782 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
19 Hb_002686_320 0.1163759211 - - syntaxin, putative [Ricinus communis]
20 Hb_089140_070 0.1167957688 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]

Gene co-expression network

sample Hb_003656_080 Hb_003656_080 Hb_006588_100 Hb_006588_100 Hb_003656_080--Hb_006588_100 Hb_004531_060 Hb_004531_060 Hb_003656_080--Hb_004531_060 Hb_005332_030 Hb_005332_030 Hb_003656_080--Hb_005332_030 Hb_020025_030 Hb_020025_030 Hb_003656_080--Hb_020025_030 Hb_001950_090 Hb_001950_090 Hb_003656_080--Hb_001950_090 Hb_000140_200 Hb_000140_200 Hb_003656_080--Hb_000140_200 Hb_000480_060 Hb_000480_060 Hb_006588_100--Hb_000480_060 Hb_001699_270 Hb_001699_270 Hb_006588_100--Hb_001699_270 Hb_006588_100--Hb_001950_090 Hb_006588_100--Hb_000140_200 Hb_000345_450 Hb_000345_450 Hb_006588_100--Hb_000345_450 Hb_001263_030 Hb_001263_030 Hb_004531_060--Hb_001263_030 Hb_004531_060--Hb_020025_030 Hb_004531_060--Hb_000140_200 Hb_004531_060--Hb_006588_100 Hb_004531_060--Hb_001950_090 Hb_159809_040 Hb_159809_040 Hb_005332_030--Hb_159809_040 Hb_000977_190 Hb_000977_190 Hb_005332_030--Hb_000977_190 Hb_000522_160 Hb_000522_160 Hb_005332_030--Hb_000522_160 Hb_006810_040 Hb_006810_040 Hb_005332_030--Hb_006810_040 Hb_005332_030--Hb_001263_030 Hb_020025_030--Hb_000140_200 Hb_020025_030--Hb_001263_030 Hb_000094_230 Hb_000094_230 Hb_020025_030--Hb_000094_230 Hb_020025_030--Hb_000977_190 Hb_003847_060 Hb_003847_060 Hb_001950_090--Hb_003847_060 Hb_001950_090--Hb_001699_270 Hb_001950_090--Hb_000345_450 Hb_000317_120 Hb_000317_120 Hb_001950_090--Hb_000317_120 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650 Hb_000140_200--Hb_000094_230 Hb_000140_200--Hb_001263_030 Hb_000140_200--Hb_000977_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.049953 1.44349 1.20995 0 0.0199117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.270463 0.0696174

CAGE analysis