Hb_004531_060

Information

Type transcription factor
Description TF Family: ERF
Location Contig4531: 32341-33087
Sequence    

Annotation

kegg
ID rcu:RCOM_1491630
description Transcriptional factor TINY, putative
nr
ID XP_012073419.1
description PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
swissprot
ID Q9LYD3
description Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1
trembl
ID A0A067KQN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06329 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor tiny-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_060 0.0 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
2 Hb_001263_030 0.0769600303 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
3 Hb_003656_080 0.0791660401 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
4 Hb_020025_030 0.0839475163 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
5 Hb_000140_200 0.099491354 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
6 Hb_006588_100 0.1003936204 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001950_090 0.101562912 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
8 Hb_005332_030 0.103583549 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000094_230 0.1043250374 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
10 Hb_008215_020 0.1063111862 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_000317_120 0.1063582383 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
12 Hb_003106_090 0.1119573731 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
13 Hb_006810_040 0.1128453886 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_003847_060 0.1134103293 - - syntaxin, putative [Ricinus communis]
15 Hb_025163_020 0.1146210719 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
16 Hb_000592_100 0.1168956113 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
17 Hb_000480_060 0.1183991856 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
18 Hb_159809_040 0.1185997092 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000030_080 0.1218078622 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
20 Hb_010672_010 0.1218630328 - - hypothetical protein JCGZ_00895 [Jatropha curcas]

Gene co-expression network

sample Hb_004531_060 Hb_004531_060 Hb_001263_030 Hb_001263_030 Hb_004531_060--Hb_001263_030 Hb_003656_080 Hb_003656_080 Hb_004531_060--Hb_003656_080 Hb_020025_030 Hb_020025_030 Hb_004531_060--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_004531_060--Hb_000140_200 Hb_006588_100 Hb_006588_100 Hb_004531_060--Hb_006588_100 Hb_001950_090 Hb_001950_090 Hb_004531_060--Hb_001950_090 Hb_000030_080 Hb_000030_080 Hb_001263_030--Hb_000030_080 Hb_001263_030--Hb_020025_030 Hb_001263_030--Hb_000140_200 Hb_005332_030 Hb_005332_030 Hb_001263_030--Hb_005332_030 Hb_001454_270 Hb_001454_270 Hb_001263_030--Hb_001454_270 Hb_003656_080--Hb_006588_100 Hb_003656_080--Hb_005332_030 Hb_003656_080--Hb_020025_030 Hb_003656_080--Hb_001950_090 Hb_003656_080--Hb_000140_200 Hb_020025_030--Hb_000140_200 Hb_000094_230 Hb_000094_230 Hb_020025_030--Hb_000094_230 Hb_000977_190 Hb_000977_190 Hb_020025_030--Hb_000977_190 Hb_000140_200--Hb_006588_100 Hb_000140_200--Hb_000094_230 Hb_000140_200--Hb_000977_190 Hb_000480_060 Hb_000480_060 Hb_006588_100--Hb_000480_060 Hb_001699_270 Hb_001699_270 Hb_006588_100--Hb_001699_270 Hb_006588_100--Hb_001950_090 Hb_000345_450 Hb_000345_450 Hb_006588_100--Hb_000345_450 Hb_003847_060 Hb_003847_060 Hb_001950_090--Hb_003847_060 Hb_001950_090--Hb_001699_270 Hb_001950_090--Hb_000345_450 Hb_000317_120 Hb_000317_120 Hb_001950_090--Hb_000317_120 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.345773 5.12173 3.84956 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.10946 0.231867

CAGE analysis