Hb_000030_080

Information

Type -
Description -
Location Contig30: 57144-59492
Sequence    

Annotation

kegg
ID rcu:RCOM_1121760
description hypothetical protein
nr
ID XP_012070469.1
description PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02732 PE=4 SV=1
Gene Ontology
ID GO:0005681
description arm repeat superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31490: 57037-57416 , PASA_asmbl_31491: 60086-60460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_080 0.0 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
2 Hb_003902_070 0.0670071469 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004592_030 0.0751627185 - - unknown [Lotus japonicus]
4 Hb_001263_030 0.0766541999 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
5 Hb_001454_270 0.0779222395 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
6 Hb_001076_010 0.0804120827 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
7 Hb_004197_020 0.0863749055 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
8 Hb_002700_030 0.0969544967 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
9 Hb_004631_040 0.0987051824 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
10 Hb_006588_100 0.1021761943 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000085_360 0.1033431282 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
12 Hb_000260_670 0.1037081558 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
13 Hb_080147_070 0.1070417253 - - Rop5 [Hevea brasiliensis]
14 Hb_000480_060 0.1073620188 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
15 Hb_003106_090 0.1085144817 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
16 Hb_000077_300 0.1125106528 - - PREDICTED: expansin-B3-like [Jatropha curcas]
17 Hb_005276_090 0.1125932299 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
18 Hb_005542_150 0.1141928651 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
19 Hb_001369_550 0.114384469 - - 21 kDa protein precursor, putative [Ricinus communis]
20 Hb_000272_010 0.1185020663 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]

Gene co-expression network

sample Hb_000030_080 Hb_000030_080 Hb_003902_070 Hb_003902_070 Hb_000030_080--Hb_003902_070 Hb_004592_030 Hb_004592_030 Hb_000030_080--Hb_004592_030 Hb_001263_030 Hb_001263_030 Hb_000030_080--Hb_001263_030 Hb_001454_270 Hb_001454_270 Hb_000030_080--Hb_001454_270 Hb_001076_010 Hb_001076_010 Hb_000030_080--Hb_001076_010 Hb_004197_020 Hb_004197_020 Hb_000030_080--Hb_004197_020 Hb_003902_070--Hb_004592_030 Hb_000261_550 Hb_000261_550 Hb_003902_070--Hb_000261_550 Hb_000077_300 Hb_000077_300 Hb_003902_070--Hb_000077_300 Hb_003902_070--Hb_001454_270 Hb_002757_010 Hb_002757_010 Hb_003902_070--Hb_002757_010 Hb_004592_030--Hb_004197_020 Hb_004631_040 Hb_004631_040 Hb_004592_030--Hb_004631_040 Hb_000480_060 Hb_000480_060 Hb_004592_030--Hb_000480_060 Hb_000085_360 Hb_000085_360 Hb_004592_030--Hb_000085_360 Hb_004531_060 Hb_004531_060 Hb_001263_030--Hb_004531_060 Hb_020025_030 Hb_020025_030 Hb_001263_030--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_001263_030--Hb_000140_200 Hb_005332_030 Hb_005332_030 Hb_001263_030--Hb_005332_030 Hb_001263_030--Hb_001454_270 Hb_002700_030 Hb_002700_030 Hb_001454_270--Hb_002700_030 Hb_003106_090 Hb_003106_090 Hb_001454_270--Hb_003106_090 Hb_001454_270--Hb_004592_030 Hb_002874_010 Hb_002874_010 Hb_001076_010--Hb_002874_010 Hb_000358_010 Hb_000358_010 Hb_001076_010--Hb_000358_010 Hb_006316_090 Hb_006316_090 Hb_001076_010--Hb_006316_090 Hb_001076_010--Hb_004631_040 Hb_000103_460 Hb_000103_460 Hb_001076_010--Hb_000103_460 Hb_004197_020--Hb_004631_040 Hb_000176_040 Hb_000176_040 Hb_004197_020--Hb_000176_040 Hb_004197_020--Hb_003902_070 Hb_004197_020--Hb_000480_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0516464 4.22064 2.34839 0 0.0104484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.02771 0.365573

CAGE analysis