Hb_002757_010

Information

Type -
Description -
Location Contig2757: 1774-2142
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10580g
description hypothetical protein
nr
ID XP_006376181.1
description hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
swissprot
ID P58822
description Polygalacturonase inhibitor 2 OS=Phaseolus vulgaris GN=PGIP2 PE=1 SV=1
trembl
ID U5FS07
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10580g PE=4 SV=1
Gene Ontology
ID GO:0004714
description probably inactive leucine-rich repeat receptor-like protein kinase at2g25790

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002757_010 0.0 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
2 Hb_000077_300 0.0484465409 - - PREDICTED: expansin-B3-like [Jatropha curcas]
3 Hb_002700_030 0.0808401541 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
4 Hb_003902_070 0.0823641927 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000205_180 0.0866008272 - - lipoxygenase, putative [Ricinus communis]
6 Hb_062807_010 0.1004500529 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
7 Hb_005116_120 0.1007279187 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
8 Hb_003626_020 0.103716368 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
9 Hb_001310_060 0.1047325445 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_005305_160 0.1085801026 - - conserved hypothetical protein [Ricinus communis]
11 Hb_181744_010 0.1123810172 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_000261_550 0.1129343378 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
13 Hb_001454_270 0.1152348037 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
14 Hb_001348_040 0.1156076434 - - hypothetical protein VITISV_006651 [Vitis vinifera]
15 Hb_002081_060 0.117349368 - - cyclin d, putative [Ricinus communis]
16 Hb_001284_070 0.1175406139 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003777_260 0.1197396722 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
18 Hb_001439_050 0.1242869061 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
19 Hb_080147_070 0.1254562048 - - Rop5 [Hevea brasiliensis]
20 Hb_001369_550 0.1254877546 - - 21 kDa protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002757_010 Hb_002757_010 Hb_000077_300 Hb_000077_300 Hb_002757_010--Hb_000077_300 Hb_002700_030 Hb_002700_030 Hb_002757_010--Hb_002700_030 Hb_003902_070 Hb_003902_070 Hb_002757_010--Hb_003902_070 Hb_000205_180 Hb_000205_180 Hb_002757_010--Hb_000205_180 Hb_062807_010 Hb_062807_010 Hb_002757_010--Hb_062807_010 Hb_005116_120 Hb_005116_120 Hb_002757_010--Hb_005116_120 Hb_000077_300--Hb_002700_030 Hb_000077_300--Hb_003902_070 Hb_001310_060 Hb_001310_060 Hb_000077_300--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_000077_300--Hb_080147_070 Hb_000077_300--Hb_000205_180 Hb_002700_030--Hb_080147_070 Hb_001284_070 Hb_001284_070 Hb_002700_030--Hb_001284_070 Hb_002700_030--Hb_001310_060 Hb_002700_030--Hb_003902_070 Hb_000030_080 Hb_000030_080 Hb_003902_070--Hb_000030_080 Hb_004592_030 Hb_004592_030 Hb_003902_070--Hb_004592_030 Hb_000261_550 Hb_000261_550 Hb_003902_070--Hb_000261_550 Hb_001454_270 Hb_001454_270 Hb_003902_070--Hb_001454_270 Hb_003626_020 Hb_003626_020 Hb_000205_180--Hb_003626_020 Hb_001369_550 Hb_001369_550 Hb_000205_180--Hb_001369_550 Hb_000205_180--Hb_001310_060 Hb_000205_180--Hb_001284_070 Hb_000205_180--Hb_002700_030 Hb_001439_050 Hb_001439_050 Hb_062807_010--Hb_001439_050 Hb_003101_020 Hb_003101_020 Hb_062807_010--Hb_003101_020 Hb_108576_020 Hb_108576_020 Hb_062807_010--Hb_108576_020 Hb_004602_010 Hb_004602_010 Hb_062807_010--Hb_004602_010 Hb_008304_010 Hb_008304_010 Hb_062807_010--Hb_008304_010 Hb_007313_030 Hb_007313_030 Hb_062807_010--Hb_007313_030 Hb_003777_260 Hb_003777_260 Hb_005116_120--Hb_003777_260 Hb_181744_010 Hb_181744_010 Hb_005116_120--Hb_181744_010 Hb_000340_550 Hb_000340_550 Hb_005116_120--Hb_000340_550 Hb_005288_090 Hb_005288_090 Hb_005116_120--Hb_005288_090 Hb_001998_180 Hb_001998_180 Hb_005116_120--Hb_001998_180 Hb_001279_110 Hb_001279_110 Hb_005116_120--Hb_001279_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.910309 64.0238 27.9861 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.8703 14.1107

CAGE analysis