Hb_007313_030

Information

Type -
Description -
Location Contig7313: 31116-33843
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02930g
description POPTRDRAFT_893686; hypothetical protein
nr
ID XP_012089455.1
description PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
swissprot
ID Q8RXC8
description Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1
trembl
ID B9I821
description Kinase family protein OS=Populus trichocarpa GN=POPTR_0013s02930g PE=3 SV=2
Gene Ontology
ID GO:0005634
description receptor-like cytosolic serine threonine-protein kinase rbk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007313_030 0.0 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
2 Hb_002518_040 0.0830383614 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
3 Hb_108576_020 0.0839330677 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000086_470 0.0842869216 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
5 Hb_003101_020 0.0875739967 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
6 Hb_001439_050 0.0925112731 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
7 Hb_062807_010 0.0951538365 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
8 Hb_004213_010 0.0952260468 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_001153_160 0.0953608757 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
10 Hb_004115_010 0.1005915052 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
11 Hb_007237_020 0.10142971 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
12 Hb_027684_010 0.1032061423 - - hypothetical protein RCOM_0504250 [Ricinus communis]
13 Hb_004218_140 0.1033560993 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
14 Hb_005892_050 0.1052619852 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
15 Hb_004202_030 0.1083761382 - - PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]
16 Hb_006501_080 0.1092801006 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
17 Hb_004602_010 0.1129242182 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
18 Hb_000120_340 0.11329748 - - Cucumisin precursor, putative [Ricinus communis]
19 Hb_000722_030 0.1151997816 - - putative plant disease resistance family protein [Populus trichocarpa]
20 Hb_019973_010 0.1168518529 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007313_030 Hb_007313_030 Hb_002518_040 Hb_002518_040 Hb_007313_030--Hb_002518_040 Hb_108576_020 Hb_108576_020 Hb_007313_030--Hb_108576_020 Hb_000086_470 Hb_000086_470 Hb_007313_030--Hb_000086_470 Hb_003101_020 Hb_003101_020 Hb_007313_030--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_007313_030--Hb_001439_050 Hb_062807_010 Hb_062807_010 Hb_007313_030--Hb_062807_010 Hb_000722_030 Hb_000722_030 Hb_002518_040--Hb_000722_030 Hb_002518_040--Hb_003101_020 Hb_002518_040--Hb_001439_050 Hb_001258_130 Hb_001258_130 Hb_002518_040--Hb_001258_130 Hb_027684_010 Hb_027684_010 Hb_002518_040--Hb_027684_010 Hb_001153_160 Hb_001153_160 Hb_108576_020--Hb_001153_160 Hb_004213_010 Hb_004213_010 Hb_108576_020--Hb_004213_010 Hb_108576_020--Hb_003101_020 Hb_108576_020--Hb_001439_050 Hb_108576_020--Hb_062807_010 Hb_007237_020 Hb_007237_020 Hb_000086_470--Hb_007237_020 Hb_000120_340 Hb_000120_340 Hb_000086_470--Hb_000120_340 Hb_004202_030 Hb_004202_030 Hb_000086_470--Hb_004202_030 Hb_007632_160 Hb_007632_160 Hb_000086_470--Hb_007632_160 Hb_000627_040 Hb_000627_040 Hb_000086_470--Hb_000627_040 Hb_003101_020--Hb_001439_050 Hb_003101_020--Hb_062807_010 Hb_002066_100 Hb_002066_100 Hb_003101_020--Hb_002066_100 Hb_003101_020--Hb_000722_030 Hb_001439_050--Hb_062807_010 Hb_011671_050 Hb_011671_050 Hb_001439_050--Hb_011671_050 Hb_004602_010 Hb_004602_010 Hb_062807_010--Hb_004602_010 Hb_008304_010 Hb_008304_010 Hb_062807_010--Hb_008304_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.110431 1.08154 0.474127 0 0.013272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0975789 0.395781

CAGE analysis