Hb_007632_160

Information

Type -
Description -
Location Contig7632: 155777-159010
Sequence    

Annotation

kegg
ID rcu:RCOM_0521900
description hypothetical protein
nr
ID XP_002522745.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FM65
description Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1
trembl
ID B9S9S6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0521900 PE=4 SV=1
Gene Ontology
ID GO:0005618
description fasciclin-like arabinogalactan protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57361: 155715-155820 , PASA_asmbl_57363: 159577-159992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001157_050 0.0711025517 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
3 Hb_000418_110 0.0801807556 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
4 Hb_000120_340 0.0830024468 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_000086_470 0.0848211858 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
6 Hb_004122_010 0.0863104522 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
7 Hb_005675_050 0.0866677588 - - alpha-glucosidase, putative [Ricinus communis]
8 Hb_121313_010 0.0953486819 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
9 Hb_005276_190 0.0962313081 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
10 Hb_003666_070 0.0963261371 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
11 Hb_000297_210 0.0964871038 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
12 Hb_011671_050 0.1007077584 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
13 Hb_015048_020 0.100966752 - - PREDICTED: myb-like protein D [Jatropha curcas]
14 Hb_002609_120 0.1053585306 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
15 Hb_000359_100 0.1060108963 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002518_040 0.106749045 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
17 Hb_008304_010 0.1068933837 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
18 Hb_001007_020 0.1080480626 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
19 Hb_000112_080 0.1104506061 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
20 Hb_003207_120 0.111182804 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007632_160 Hb_007632_160 Hb_001157_050 Hb_001157_050 Hb_007632_160--Hb_001157_050 Hb_000418_110 Hb_000418_110 Hb_007632_160--Hb_000418_110 Hb_000120_340 Hb_000120_340 Hb_007632_160--Hb_000120_340 Hb_000086_470 Hb_000086_470 Hb_007632_160--Hb_000086_470 Hb_004122_010 Hb_004122_010 Hb_007632_160--Hb_004122_010 Hb_005675_050 Hb_005675_050 Hb_007632_160--Hb_005675_050 Hb_015048_020 Hb_015048_020 Hb_001157_050--Hb_015048_020 Hb_001366_290 Hb_001366_290 Hb_001157_050--Hb_001366_290 Hb_000003_750 Hb_000003_750 Hb_001157_050--Hb_000003_750 Hb_000996_070 Hb_000996_070 Hb_001157_050--Hb_000996_070 Hb_128196_010 Hb_128196_010 Hb_001157_050--Hb_128196_010 Hb_001007_020 Hb_001007_020 Hb_000418_110--Hb_001007_020 Hb_002894_060 Hb_002894_060 Hb_000418_110--Hb_002894_060 Hb_000134_130 Hb_000134_130 Hb_000418_110--Hb_000134_130 Hb_019516_010 Hb_019516_010 Hb_000418_110--Hb_019516_010 Hb_098315_060 Hb_098315_060 Hb_000418_110--Hb_098315_060 Hb_003666_070 Hb_003666_070 Hb_000120_340--Hb_003666_070 Hb_000120_340--Hb_000086_470 Hb_019973_010 Hb_019973_010 Hb_000120_340--Hb_019973_010 Hb_011671_050 Hb_011671_050 Hb_000120_340--Hb_011671_050 Hb_007237_020 Hb_007237_020 Hb_000120_340--Hb_007237_020 Hb_000086_470--Hb_007237_020 Hb_004202_030 Hb_004202_030 Hb_000086_470--Hb_004202_030 Hb_007313_030 Hb_007313_030 Hb_000086_470--Hb_007313_030 Hb_000627_040 Hb_000627_040 Hb_000086_470--Hb_000627_040 Hb_004122_010--Hb_005675_050 Hb_000297_210 Hb_000297_210 Hb_004122_010--Hb_000297_210 Hb_001514_030 Hb_001514_030 Hb_004122_010--Hb_001514_030 Hb_168918_010 Hb_168918_010 Hb_004122_010--Hb_168918_010 Hb_005181_170 Hb_005181_170 Hb_004122_010--Hb_005181_170 Hb_005675_050--Hb_003666_070 Hb_000739_170 Hb_000739_170 Hb_005675_050--Hb_000739_170 Hb_003097_130 Hb_003097_130 Hb_005675_050--Hb_003097_130 Hb_000418_170 Hb_000418_170 Hb_005675_050--Hb_000418_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07216 12.1114 9.59424 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0875708 0 0.0432415 1.21825 4.71961

CAGE analysis