Hb_000003_750

Information

Type -
Description -
Location Contig3: 585981-593430
Sequence    

Annotation

kegg
ID tcc:TCM_028898
description Kinase family protein / peptidoglycan-binding LysM domain-containing protein isoform 1
nr
ID XP_012069077.1
description PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
swissprot
ID F4IB81
description LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1
trembl
ID A0A067KXC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24855 PE=3 SV=1
Gene Ontology
ID GO:0004674
description lysm domain receptor-like kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31460: 586325-593012 , PASA_asmbl_31461: 593015-593137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_750 0.0 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
2 Hb_011918_070 0.0750456664 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
3 Hb_001157_050 0.0772291456 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
4 Hb_003750_120 0.0840017514 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
5 Hb_005496_040 0.0848872204 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
6 Hb_070498_010 0.0869016205 - - receptor kinase, putative [Ricinus communis]
7 Hb_015048_020 0.0878934418 - - PREDICTED: myb-like protein D [Jatropha curcas]
8 Hb_000032_420 0.0895708837 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
9 Hb_000112_080 0.0922257331 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
10 Hb_001159_090 0.0969285301 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
11 Hb_003935_040 0.097507381 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
12 Hb_008686_010 0.0986595972 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000878_050 0.0996090876 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
14 Hb_000735_020 0.1002541613 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
15 Hb_128196_010 0.1004813876 - - conserved hypothetical protein [Ricinus communis]
16 Hb_168918_010 0.1015972758 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_001056_040 0.1021727395 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
18 Hb_002045_210 0.1031939847 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
19 Hb_007218_040 0.1036120915 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
20 Hb_001085_190 0.1059826363 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000003_750 Hb_000003_750 Hb_011918_070 Hb_011918_070 Hb_000003_750--Hb_011918_070 Hb_001157_050 Hb_001157_050 Hb_000003_750--Hb_001157_050 Hb_003750_120 Hb_003750_120 Hb_000003_750--Hb_003750_120 Hb_005496_040 Hb_005496_040 Hb_000003_750--Hb_005496_040 Hb_070498_010 Hb_070498_010 Hb_000003_750--Hb_070498_010 Hb_015048_020 Hb_015048_020 Hb_000003_750--Hb_015048_020 Hb_000996_030 Hb_000996_030 Hb_011918_070--Hb_000996_030 Hb_005542_120 Hb_005542_120 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_004696_010 Hb_004696_010 Hb_011918_070--Hb_004696_010 Hb_000735_020 Hb_000735_020 Hb_011918_070--Hb_000735_020 Hb_001157_050--Hb_015048_020 Hb_007632_160 Hb_007632_160 Hb_001157_050--Hb_007632_160 Hb_001366_290 Hb_001366_290 Hb_001157_050--Hb_001366_290 Hb_000996_070 Hb_000996_070 Hb_001157_050--Hb_000996_070 Hb_128196_010 Hb_128196_010 Hb_001157_050--Hb_128196_010 Hb_003750_120--Hb_005496_040 Hb_001159_090 Hb_001159_090 Hb_003750_120--Hb_001159_090 Hb_001007_020 Hb_001007_020 Hb_003750_120--Hb_001007_020 Hb_002045_210 Hb_002045_210 Hb_003750_120--Hb_002045_210 Hb_000418_110 Hb_000418_110 Hb_003750_120--Hb_000418_110 Hb_000342_040 Hb_000342_040 Hb_005496_040--Hb_000342_040 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_000032_420 Hb_000032_420 Hb_005496_040--Hb_000032_420 Hb_004117_090 Hb_004117_090 Hb_005496_040--Hb_004117_090 Hb_070498_010--Hb_128196_010 Hb_002301_400 Hb_002301_400 Hb_070498_010--Hb_002301_400 Hb_070498_010--Hb_000996_030 Hb_012404_020 Hb_012404_020 Hb_070498_010--Hb_012404_020 Hb_070498_010--Hb_011918_070 Hb_015048_020--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_015048_020--Hb_010449_010 Hb_001117_050 Hb_001117_050 Hb_015048_020--Hb_001117_050 Hb_000112_080 Hb_000112_080 Hb_015048_020--Hb_000112_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0441495 0.824601 5.58911 7.36707 0.039618 0.0440457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0154657 0 0.0697689 0.748458 2.6196

CAGE analysis