Hb_004117_090

Information

Type transcription factor
Description TF Family: WRKY
Location Contig4117: 60429-63204
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10950g
description POPTRDRAFT_653213; hypothetical protein
nr
ID XP_012091041.1
description PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
swissprot
ID Q9LY00
description Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1
trembl
ID S5CKI4
description Uncharacterized protein OS=Jatropha curcas GN=WRKY56 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40746: 62984-63193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_090 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
2 Hb_005496_040 0.0847737266 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
3 Hb_000342_040 0.0942545104 - - pollen specific protein sf21, putative [Ricinus communis]
4 Hb_001544_090 0.1030742404 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_005976_110 0.1031917547 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
6 Hb_000190_170 0.1074466876 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
7 Hb_000032_420 0.1101625604 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
8 Hb_010889_010 0.1132587403 - - PREDICTED: myosin-12 [Jatropha curcas]
9 Hb_001080_190 0.1176958687 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
10 Hb_000003_750 0.117696669 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
11 Hb_000878_050 0.1182036038 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
12 Hb_004435_020 0.1187150297 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
13 Hb_132840_150 0.1213064435 - - RNA-binding region-containing protein, putative [Ricinus communis]
14 Hb_007617_010 0.1233416718 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
15 Hb_001186_100 0.1236972805 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
16 Hb_128196_010 0.1241809849 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002045_210 0.1245919742 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
18 Hb_005568_020 0.1286831945 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
19 Hb_008686_010 0.1288719248 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000321_170 0.1293006537 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_004117_090 Hb_004117_090 Hb_005496_040 Hb_005496_040 Hb_004117_090--Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_004117_090--Hb_000342_040 Hb_001544_090 Hb_001544_090 Hb_004117_090--Hb_001544_090 Hb_005976_110 Hb_005976_110 Hb_004117_090--Hb_005976_110 Hb_000190_170 Hb_000190_170 Hb_004117_090--Hb_000190_170 Hb_000032_420 Hb_000032_420 Hb_004117_090--Hb_000032_420 Hb_005496_040--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_005496_040--Hb_003750_120 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_005496_040--Hb_000032_420 Hb_000003_750 Hb_000003_750 Hb_005496_040--Hb_000003_750 Hb_002045_210 Hb_002045_210 Hb_000342_040--Hb_002045_210 Hb_000441_130 Hb_000441_130 Hb_000342_040--Hb_000441_130 Hb_000342_040--Hb_000032_420 Hb_000342_040--Hb_001544_090 Hb_001544_090--Hb_005976_110 Hb_001080_190 Hb_001080_190 Hb_001544_090--Hb_001080_190 Hb_001674_010 Hb_001674_010 Hb_001544_090--Hb_001674_010 Hb_001095_020 Hb_001095_020 Hb_001544_090--Hb_001095_020 Hb_001544_090--Hb_000032_420 Hb_007617_010 Hb_007617_010 Hb_001544_090--Hb_007617_010 Hb_004435_020 Hb_004435_020 Hb_005976_110--Hb_004435_020 Hb_005976_110--Hb_001095_020 Hb_000878_050 Hb_000878_050 Hb_005976_110--Hb_000878_050 Hb_000680_170 Hb_000680_170 Hb_005976_110--Hb_000680_170 Hb_005976_110--Hb_000032_420 Hb_002411_090 Hb_002411_090 Hb_000190_170--Hb_002411_090 Hb_039222_010 Hb_039222_010 Hb_000190_170--Hb_039222_010 Hb_000190_170--Hb_001544_090 Hb_007811_020 Hb_007811_020 Hb_000190_170--Hb_007811_020 Hb_000190_170--Hb_001095_020 Hb_010449_010 Hb_010449_010 Hb_000032_420--Hb_010449_010 Hb_017383_010 Hb_017383_010 Hb_000032_420--Hb_017383_010 Hb_000996_070 Hb_000996_070 Hb_000032_420--Hb_000996_070 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_000032_420--Hb_000441_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.532126 2.39749 21.3384 25.3649 0.381914 0.0374893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.731008 0.229981 0.636257 1.27843 11.7096

CAGE analysis