Hb_002411_090

Information

Type -
Description -
Location Contig2411: 87230-87787
Sequence    

Annotation

kegg
ID rcu:RCOM_0621020
description ring finger protein, putative
nr
ID XP_012068725.1
description PREDICTED: putative RING-H2 finger protein ATL69 [Jatropha curcas]
swissprot
ID Q9FL42
description Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1
trembl
ID A0A067L8Z0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24568 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl69

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25263: 88683-89249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_090 0.0 - - PREDICTED: putative RING-H2 finger protein ATL69 [Jatropha curcas]
2 Hb_000005_240 0.0701487808 - - Shugoshin-1, putative [Ricinus communis]
3 Hb_009486_050 0.0867988472 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
4 Hb_039222_010 0.0895631954 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
5 Hb_000190_170 0.0927738786 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
6 Hb_001080_190 0.0945834707 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
7 Hb_001021_120 0.0965808407 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
8 Hb_000009_270 0.0996785051 - - Calmodulin, putative [Ricinus communis]
9 Hb_007617_010 0.1033465681 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
10 Hb_001079_060 0.1081327116 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
11 Hb_007922_030 0.1082981275 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
12 Hb_002609_120 0.1097233821 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
13 Hb_032920_020 0.1128019915 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_000130_460 0.1130921836 - - hypothetical protein JCGZ_15296 [Jatropha curcas]
15 Hb_000331_170 0.1138327812 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
16 Hb_051663_010 0.1164189404 - - receptor-kinase, putative [Ricinus communis]
17 Hb_000003_500 0.1164410589 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
18 Hb_001638_200 0.1183765248 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
19 Hb_017434_010 0.1183824213 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
20 Hb_001544_090 0.1185294418 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]

Gene co-expression network

sample Hb_002411_090 Hb_002411_090 Hb_000005_240 Hb_000005_240 Hb_002411_090--Hb_000005_240 Hb_009486_050 Hb_009486_050 Hb_002411_090--Hb_009486_050 Hb_039222_010 Hb_039222_010 Hb_002411_090--Hb_039222_010 Hb_000190_170 Hb_000190_170 Hb_002411_090--Hb_000190_170 Hb_001080_190 Hb_001080_190 Hb_002411_090--Hb_001080_190 Hb_001021_120 Hb_001021_120 Hb_002411_090--Hb_001021_120 Hb_000005_240--Hb_009486_050 Hb_000005_240--Hb_039222_010 Hb_000005_240--Hb_001080_190 Hb_000005_240--Hb_001021_120 Hb_001079_060 Hb_001079_060 Hb_000005_240--Hb_001079_060 Hb_002609_120 Hb_002609_120 Hb_009486_050--Hb_002609_120 Hb_000009_270 Hb_000009_270 Hb_009486_050--Hb_000009_270 Hb_009486_050--Hb_001021_120 Hb_007922_030 Hb_007922_030 Hb_009486_050--Hb_007922_030 Hb_001638_200 Hb_001638_200 Hb_009486_050--Hb_001638_200 Hb_003894_110 Hb_003894_110 Hb_039222_010--Hb_003894_110 Hb_007218_040 Hb_007218_040 Hb_039222_010--Hb_007218_040 Hb_000483_450 Hb_000483_450 Hb_039222_010--Hb_000483_450 Hb_039222_010--Hb_001021_120 Hb_000190_170--Hb_039222_010 Hb_001544_090 Hb_001544_090 Hb_000190_170--Hb_001544_090 Hb_007811_020 Hb_007811_020 Hb_000190_170--Hb_007811_020 Hb_004117_090 Hb_004117_090 Hb_000190_170--Hb_004117_090 Hb_001095_020 Hb_001095_020 Hb_000190_170--Hb_001095_020 Hb_007617_010 Hb_007617_010 Hb_001080_190--Hb_007617_010 Hb_001080_190--Hb_001544_090 Hb_001674_010 Hb_001674_010 Hb_001080_190--Hb_001674_010 Hb_001080_190--Hb_001638_200 Hb_017434_010 Hb_017434_010 Hb_001080_190--Hb_017434_010 Hb_001080_190--Hb_000009_270 Hb_001021_120--Hb_000009_270 Hb_031321_020 Hb_031321_020 Hb_001021_120--Hb_031321_020 Hb_000134_130 Hb_000134_130 Hb_001021_120--Hb_000134_130 Hb_001021_120--Hb_007922_030 Hb_152910_050 Hb_152910_050 Hb_001021_120--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_001021_120--Hb_098315_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.240224 6.79556 6.46915 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225419 0.0885662 0 0.218952 4.4013

CAGE analysis