Hb_000005_240

Information

Type -
Description -
Location Contig5: 254280-257770
Sequence    

Annotation

kegg
ID rcu:RCOM_0474400
description Shugoshin-1, putative
nr
ID XP_002523714.1
description Shugoshin-1, putative [Ricinus communis]
swissprot
ID Q4QSC8
description Shugoshin-1 OS=Zea mays GN=SGO1 PE=2 SV=1
trembl
ID B9SCJ5
description Shugoshin-1, putative OS=Ricinus communis GN=RCOM_0474400 PE=4 SV=1
Gene Ontology
ID GO:0043229
description shugoshin c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45700: 254140-257009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_240 0.0 - - Shugoshin-1, putative [Ricinus communis]
2 Hb_009486_050 0.0698762171 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
3 Hb_002411_090 0.0701487808 - - PREDICTED: putative RING-H2 finger protein ATL69 [Jatropha curcas]
4 Hb_039222_010 0.0862630724 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
5 Hb_001080_190 0.0875770416 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
6 Hb_001021_120 0.0902891593 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
7 Hb_001079_060 0.0910905198 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
8 Hb_007617_010 0.0917088507 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
9 Hb_000009_270 0.093208503 - - Calmodulin, putative [Ricinus communis]
10 Hb_051663_010 0.0982590544 - - receptor-kinase, putative [Ricinus communis]
11 Hb_002609_120 0.1007310454 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
12 Hb_007922_030 0.1025536599 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
13 Hb_003894_110 0.1068310155 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
14 Hb_000134_130 0.1069852645 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
15 Hb_001544_090 0.1075222988 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_111985_100 0.1083593864 - - beta-galactosidase, putative [Ricinus communis]
17 Hb_001516_010 0.1102302746 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
18 Hb_001514_030 0.1106887551 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
19 Hb_032920_020 0.111600513 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_019516_010 0.1119213898 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000005_240 Hb_000005_240 Hb_009486_050 Hb_009486_050 Hb_000005_240--Hb_009486_050 Hb_002411_090 Hb_002411_090 Hb_000005_240--Hb_002411_090 Hb_039222_010 Hb_039222_010 Hb_000005_240--Hb_039222_010 Hb_001080_190 Hb_001080_190 Hb_000005_240--Hb_001080_190 Hb_001021_120 Hb_001021_120 Hb_000005_240--Hb_001021_120 Hb_001079_060 Hb_001079_060 Hb_000005_240--Hb_001079_060 Hb_002609_120 Hb_002609_120 Hb_009486_050--Hb_002609_120 Hb_000009_270 Hb_000009_270 Hb_009486_050--Hb_000009_270 Hb_009486_050--Hb_001021_120 Hb_007922_030 Hb_007922_030 Hb_009486_050--Hb_007922_030 Hb_001638_200 Hb_001638_200 Hb_009486_050--Hb_001638_200 Hb_002411_090--Hb_009486_050 Hb_002411_090--Hb_039222_010 Hb_000190_170 Hb_000190_170 Hb_002411_090--Hb_000190_170 Hb_002411_090--Hb_001080_190 Hb_002411_090--Hb_001021_120 Hb_003894_110 Hb_003894_110 Hb_039222_010--Hb_003894_110 Hb_007218_040 Hb_007218_040 Hb_039222_010--Hb_007218_040 Hb_000483_450 Hb_000483_450 Hb_039222_010--Hb_000483_450 Hb_039222_010--Hb_001021_120 Hb_007617_010 Hb_007617_010 Hb_001080_190--Hb_007617_010 Hb_001544_090 Hb_001544_090 Hb_001080_190--Hb_001544_090 Hb_001674_010 Hb_001674_010 Hb_001080_190--Hb_001674_010 Hb_001080_190--Hb_001638_200 Hb_017434_010 Hb_017434_010 Hb_001080_190--Hb_017434_010 Hb_001080_190--Hb_000009_270 Hb_001021_120--Hb_000009_270 Hb_031321_020 Hb_031321_020 Hb_001021_120--Hb_031321_020 Hb_000134_130 Hb_000134_130 Hb_001021_120--Hb_000134_130 Hb_001021_120--Hb_007922_030 Hb_152910_050 Hb_152910_050 Hb_001021_120--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_001021_120--Hb_098315_060 Hb_001516_010 Hb_001516_010 Hb_001079_060--Hb_001516_010 Hb_001079_060--Hb_002609_120 Hb_001514_030 Hb_001514_030 Hb_001079_060--Hb_001514_030 Hb_004037_040 Hb_004037_040 Hb_001079_060--Hb_004037_040 Hb_001079_060--Hb_009486_050 Hb_002835_310 Hb_002835_310 Hb_001079_060--Hb_002835_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.166878 6.97063 6.64819 0 0.0450875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0586363 0.0922234 0 0.390612 4.01993

CAGE analysis