Hb_001544_090

Information

Type -
Description -
Location Contig1544: 128848-131264
Sequence    

Annotation

kegg
ID rcu:RCOM_1288930
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002531066.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID B9SYJ7
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_1288930 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal transport detoxification superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13348: 128883-130721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001544_090 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_005976_110 0.0643363612 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
3 Hb_001080_190 0.064931424 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
4 Hb_001674_010 0.0700881378 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
5 Hb_001095_020 0.0740204219 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
6 Hb_000032_420 0.0752987799 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
7 Hb_007617_010 0.0780589216 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
8 Hb_000878_050 0.0795202174 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
9 Hb_007811_020 0.0798891049 - - PREDICTED: expansin-A6 [Jatropha curcas]
10 Hb_004435_020 0.0815378755 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
11 Hb_000392_110 0.0830839168 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
12 Hb_098315_060 0.0878847286 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
13 Hb_017434_010 0.0883477622 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
14 Hb_000009_270 0.0895516279 - - Calmodulin, putative [Ricinus communis]
15 Hb_010449_010 0.0907400751 - - l-ascorbate oxidase, putative [Ricinus communis]
16 Hb_005496_040 0.093567565 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
17 Hb_032920_020 0.0943181476 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_002150_090 0.09471148 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
19 Hb_000028_190 0.0968665303 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
20 Hb_002066_110 0.0971468247 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001544_090 Hb_001544_090 Hb_005976_110 Hb_005976_110 Hb_001544_090--Hb_005976_110 Hb_001080_190 Hb_001080_190 Hb_001544_090--Hb_001080_190 Hb_001674_010 Hb_001674_010 Hb_001544_090--Hb_001674_010 Hb_001095_020 Hb_001095_020 Hb_001544_090--Hb_001095_020 Hb_000032_420 Hb_000032_420 Hb_001544_090--Hb_000032_420 Hb_007617_010 Hb_007617_010 Hb_001544_090--Hb_007617_010 Hb_004435_020 Hb_004435_020 Hb_005976_110--Hb_004435_020 Hb_005976_110--Hb_001095_020 Hb_000878_050 Hb_000878_050 Hb_005976_110--Hb_000878_050 Hb_000680_170 Hb_000680_170 Hb_005976_110--Hb_000680_170 Hb_005976_110--Hb_000032_420 Hb_001080_190--Hb_007617_010 Hb_001080_190--Hb_001674_010 Hb_001638_200 Hb_001638_200 Hb_001080_190--Hb_001638_200 Hb_017434_010 Hb_017434_010 Hb_001080_190--Hb_017434_010 Hb_000009_270 Hb_000009_270 Hb_001080_190--Hb_000009_270 Hb_032920_020 Hb_032920_020 Hb_001674_010--Hb_032920_020 Hb_001674_010--Hb_001095_020 Hb_000028_190 Hb_000028_190 Hb_001674_010--Hb_000028_190 Hb_001674_010--Hb_000009_270 Hb_002150_090 Hb_002150_090 Hb_001674_010--Hb_002150_090 Hb_002066_110 Hb_002066_110 Hb_001674_010--Hb_002066_110 Hb_001095_020--Hb_002150_090 Hb_001095_020--Hb_000028_190 Hb_001095_020--Hb_004435_020 Hb_007163_100 Hb_007163_100 Hb_001095_020--Hb_007163_100 Hb_001541_130 Hb_001541_130 Hb_001095_020--Hb_001541_130 Hb_010449_010 Hb_010449_010 Hb_000032_420--Hb_010449_010 Hb_017383_010 Hb_017383_010 Hb_000032_420--Hb_017383_010 Hb_000996_070 Hb_000996_070 Hb_000032_420--Hb_000996_070 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_000441_130 Hb_000441_130 Hb_000032_420--Hb_000441_130 Hb_001439_080 Hb_001439_080 Hb_007617_010--Hb_001439_080 Hb_001817_210 Hb_001817_210 Hb_007617_010--Hb_001817_210 Hb_051663_010 Hb_051663_010 Hb_007617_010--Hb_051663_010 Hb_007617_010--Hb_005976_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0669267 1.61425 15.0234 17.7641 0.10524 0.0240556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0277755 0.218529 0.0824179 0.958244 10.282

CAGE analysis