Hb_001817_210

Information

Type -
Description -
Location Contig1817: 208855-210561
Sequence    

Annotation

kegg
ID rcu:RCOM_0993660
description hypothetical protein
nr
ID XP_002521032.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P0C7P8
description Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1
trembl
ID B9S4M6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0993660 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase wnk-related

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17684: 209294-209495 , PASA_asmbl_17685: 208668-210647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007617_010 0.0861054387 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
3 Hb_001080_190 0.0949811165 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
4 Hb_000617_360 0.1049891902 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001439_080 0.1060209307 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
6 Hb_017434_010 0.1083137808 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
7 Hb_000333_020 0.1116227582 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
8 Hb_000103_220 0.1119446145 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
9 Hb_000130_460 0.1159614416 - - hypothetical protein JCGZ_15296 [Jatropha curcas]
10 Hb_001638_200 0.1174803552 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
11 Hb_012395_240 0.1200529758 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
12 Hb_001544_090 0.1226660934 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
13 Hb_003376_020 0.1229040085 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004137_040 0.1236734712 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
15 Hb_004635_120 0.1237384724 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
16 Hb_125573_010 0.1244116885 - - ATP-binding cassette transporter, putative [Ricinus communis]
17 Hb_000342_040 0.1268408361 - - pollen specific protein sf21, putative [Ricinus communis]
18 Hb_002411_090 0.1289806715 - - PREDICTED: putative RING-H2 finger protein ATL69 [Jatropha curcas]
19 Hb_000003_380 0.1294458028 - - conserved hypothetical protein [Ricinus communis]
20 Hb_029695_090 0.1312099871 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_001817_210 Hb_001817_210 Hb_007617_010 Hb_007617_010 Hb_001817_210--Hb_007617_010 Hb_001080_190 Hb_001080_190 Hb_001817_210--Hb_001080_190 Hb_000617_360 Hb_000617_360 Hb_001817_210--Hb_000617_360 Hb_001439_080 Hb_001439_080 Hb_001817_210--Hb_001439_080 Hb_017434_010 Hb_017434_010 Hb_001817_210--Hb_017434_010 Hb_000333_020 Hb_000333_020 Hb_001817_210--Hb_000333_020 Hb_007617_010--Hb_001080_190 Hb_001544_090 Hb_001544_090 Hb_007617_010--Hb_001544_090 Hb_007617_010--Hb_001439_080 Hb_051663_010 Hb_051663_010 Hb_007617_010--Hb_051663_010 Hb_005976_110 Hb_005976_110 Hb_007617_010--Hb_005976_110 Hb_001080_190--Hb_001544_090 Hb_001674_010 Hb_001674_010 Hb_001080_190--Hb_001674_010 Hb_001638_200 Hb_001638_200 Hb_001080_190--Hb_001638_200 Hb_001080_190--Hb_017434_010 Hb_000009_270 Hb_000009_270 Hb_001080_190--Hb_000009_270 Hb_002066_110 Hb_002066_110 Hb_000617_360--Hb_002066_110 Hb_052530_020 Hb_052530_020 Hb_000617_360--Hb_052530_020 Hb_004137_040 Hb_004137_040 Hb_000617_360--Hb_004137_040 Hb_002150_090 Hb_002150_090 Hb_000617_360--Hb_002150_090 Hb_005762_010 Hb_005762_010 Hb_000617_360--Hb_005762_010 Hb_001032_020 Hb_001032_020 Hb_000617_360--Hb_001032_020 Hb_001439_080--Hb_001638_200 Hb_001439_080--Hb_001080_190 Hb_009486_050 Hb_009486_050 Hb_001439_080--Hb_009486_050 Hb_000722_030 Hb_000722_030 Hb_001439_080--Hb_000722_030 Hb_000017_200 Hb_000017_200 Hb_001439_080--Hb_000017_200 Hb_000103_220 Hb_000103_220 Hb_017434_010--Hb_000103_220 Hb_098315_060 Hb_098315_060 Hb_017434_010--Hb_098315_060 Hb_152910_050 Hb_152910_050 Hb_017434_010--Hb_152910_050 Hb_017434_010--Hb_000009_270 Hb_010449_010 Hb_010449_010 Hb_017434_010--Hb_010449_010 Hb_001021_120 Hb_001021_120 Hb_017434_010--Hb_001021_120 Hb_000312_100 Hb_000312_100 Hb_000333_020--Hb_000312_100 Hb_029695_090 Hb_029695_090 Hb_000333_020--Hb_029695_090 Hb_000881_020 Hb_000881_020 Hb_000333_020--Hb_000881_020 Hb_004635_120 Hb_004635_120 Hb_000333_020--Hb_004635_120 Hb_012098_100 Hb_012098_100 Hb_000333_020--Hb_012098_100 Hb_001519_090 Hb_001519_090 Hb_000333_020--Hb_001519_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.161173 0.463423 5.20085 5.19489 0.01888 0.0394615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0460845 0.108743 0 0.0145512 3.80172

CAGE analysis