Hb_001439_080

Information

Type -
Description -
Location Contig1439: 79724-83678
Sequence    

Annotation

kegg
ID rcu:RCOM_0538570
description ATP binding protein, putative (EC:2.7.11.23)
nr
ID XP_012084756.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID A0A067JWK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19887 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11582: 79847-80167 , PASA_asmbl_11583: 81205-82775 , PASA_asmbl_11584: 83099-83561 , PASA_asmbl_11585: 83599-84118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_080 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
2 Hb_001638_200 0.064112186 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
3 Hb_007617_010 0.081870181 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
4 Hb_001080_190 0.090981664 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
5 Hb_009486_050 0.0930756542 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
6 Hb_000722_030 0.0941820962 - - putative plant disease resistance family protein [Populus trichocarpa]
7 Hb_000017_200 0.0956427985 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
8 Hb_002609_120 0.0967615459 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
9 Hb_004635_120 0.0989351654 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
10 Hb_017434_010 0.0993682686 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
11 Hb_007922_030 0.0994227003 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
12 Hb_008021_060 0.1025098644 - - Squalene monooxygenase, putative [Ricinus communis]
13 Hb_000009_270 0.1028630912 - - Calmodulin, putative [Ricinus communis]
14 Hb_000922_200 0.1029558271 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
15 Hb_005276_140 0.1036038268 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000058_180 0.1042405672 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
17 Hb_001148_110 0.1045795494 - - -
18 Hb_000331_170 0.1053741693 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
19 Hb_000156_110 0.1055697943 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
20 Hb_001817_210 0.1060209307 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001439_080 Hb_001439_080 Hb_001638_200 Hb_001638_200 Hb_001439_080--Hb_001638_200 Hb_007617_010 Hb_007617_010 Hb_001439_080--Hb_007617_010 Hb_001080_190 Hb_001080_190 Hb_001439_080--Hb_001080_190 Hb_009486_050 Hb_009486_050 Hb_001439_080--Hb_009486_050 Hb_000722_030 Hb_000722_030 Hb_001439_080--Hb_000722_030 Hb_000017_200 Hb_000017_200 Hb_001439_080--Hb_000017_200 Hb_002609_120 Hb_002609_120 Hb_001638_200--Hb_002609_120 Hb_004635_120 Hb_004635_120 Hb_001638_200--Hb_004635_120 Hb_000009_270 Hb_000009_270 Hb_001638_200--Hb_000009_270 Hb_032920_020 Hb_032920_020 Hb_001638_200--Hb_032920_020 Hb_000156_110 Hb_000156_110 Hb_001638_200--Hb_000156_110 Hb_007617_010--Hb_001080_190 Hb_001544_090 Hb_001544_090 Hb_007617_010--Hb_001544_090 Hb_001817_210 Hb_001817_210 Hb_007617_010--Hb_001817_210 Hb_051663_010 Hb_051663_010 Hb_007617_010--Hb_051663_010 Hb_005976_110 Hb_005976_110 Hb_007617_010--Hb_005976_110 Hb_001080_190--Hb_001544_090 Hb_001674_010 Hb_001674_010 Hb_001080_190--Hb_001674_010 Hb_001080_190--Hb_001638_200 Hb_017434_010 Hb_017434_010 Hb_001080_190--Hb_017434_010 Hb_001080_190--Hb_000009_270 Hb_009486_050--Hb_002609_120 Hb_009486_050--Hb_000009_270 Hb_000005_240 Hb_000005_240 Hb_009486_050--Hb_000005_240 Hb_001021_120 Hb_001021_120 Hb_009486_050--Hb_001021_120 Hb_007922_030 Hb_007922_030 Hb_009486_050--Hb_007922_030 Hb_009486_050--Hb_001638_200 Hb_002518_040 Hb_002518_040 Hb_000722_030--Hb_002518_040 Hb_023582_010 Hb_023582_010 Hb_000722_030--Hb_023582_010 Hb_002066_100 Hb_002066_100 Hb_000722_030--Hb_002066_100 Hb_016297_010 Hb_016297_010 Hb_000722_030--Hb_016297_010 Hb_019053_040 Hb_019053_040 Hb_000722_030--Hb_019053_040 Hb_027684_010 Hb_027684_010 Hb_000722_030--Hb_027684_010 Hb_000017_200--Hb_007617_010 Hb_000017_200--Hb_051663_010 Hb_168918_010 Hb_168918_010 Hb_000017_200--Hb_168918_010 Hb_000922_200 Hb_000922_200 Hb_000017_200--Hb_000922_200 Hb_000017_200--Hb_001080_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0850908 0.305602 5.48574 3.89183 0.0547279 0.00805643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0164614 0 0.111264 3.31136

CAGE analysis