Hb_002609_120

Information

Type -
Description -
Location Contig2609: 88780-89133
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25660g
description POPTRDRAFT_549087; hypothetical protein
nr
ID XP_002299821.1
description hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GIU2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s25660g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_120 0.0 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
2 Hb_000009_270 0.0393009295 - - Calmodulin, putative [Ricinus communis]
3 Hb_032920_020 0.0549028313 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_001638_200 0.0593502938 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
5 Hb_009486_050 0.0630126539 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
6 Hb_000156_110 0.0659989564 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
7 Hb_001021_120 0.0708731236 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
8 Hb_001674_010 0.0769358193 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
9 Hb_002835_310 0.0783320196 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001079_060 0.0797190252 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
11 Hb_017434_010 0.0802047519 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
12 Hb_001080_190 0.0853921349 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
13 Hb_002518_040 0.0877283824 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
14 Hb_000000_390 0.0881754809 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
15 Hb_098315_060 0.088719028 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
16 Hb_007922_030 0.0905723337 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
17 Hb_001516_010 0.0931848015 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
18 Hb_004635_120 0.0937050963 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
19 Hb_051663_010 0.0945119298 - - receptor-kinase, putative [Ricinus communis]
20 Hb_010449_010 0.0962543511 - - l-ascorbate oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002609_120 Hb_002609_120 Hb_000009_270 Hb_000009_270 Hb_002609_120--Hb_000009_270 Hb_032920_020 Hb_032920_020 Hb_002609_120--Hb_032920_020 Hb_001638_200 Hb_001638_200 Hb_002609_120--Hb_001638_200 Hb_009486_050 Hb_009486_050 Hb_002609_120--Hb_009486_050 Hb_000156_110 Hb_000156_110 Hb_002609_120--Hb_000156_110 Hb_001021_120 Hb_001021_120 Hb_002609_120--Hb_001021_120 Hb_000009_270--Hb_001021_120 Hb_000009_270--Hb_032920_020 Hb_017434_010 Hb_017434_010 Hb_000009_270--Hb_017434_010 Hb_098315_060 Hb_098315_060 Hb_000009_270--Hb_098315_060 Hb_001674_010 Hb_001674_010 Hb_000009_270--Hb_001674_010 Hb_032920_020--Hb_001674_010 Hb_000028_190 Hb_000028_190 Hb_032920_020--Hb_000028_190 Hb_032920_020--Hb_001638_200 Hb_002150_090 Hb_002150_090 Hb_032920_020--Hb_002150_090 Hb_004635_120 Hb_004635_120 Hb_001638_200--Hb_004635_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_001638_200--Hb_000009_270 Hb_001638_200--Hb_000156_110 Hb_009486_050--Hb_000009_270 Hb_000005_240 Hb_000005_240 Hb_009486_050--Hb_000005_240 Hb_009486_050--Hb_001021_120 Hb_007922_030 Hb_007922_030 Hb_009486_050--Hb_007922_030 Hb_009486_050--Hb_001638_200 Hb_002835_310 Hb_002835_310 Hb_000156_110--Hb_002835_310 Hb_000156_110--Hb_004635_120 Hb_000156_110--Hb_032920_020 Hb_000000_390 Hb_000000_390 Hb_000156_110--Hb_000000_390 Hb_031321_020 Hb_031321_020 Hb_001021_120--Hb_031321_020 Hb_000134_130 Hb_000134_130 Hb_001021_120--Hb_000134_130 Hb_001021_120--Hb_007922_030 Hb_152910_050 Hb_152910_050 Hb_001021_120--Hb_152910_050 Hb_001021_120--Hb_098315_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.828362 11.3761 9.53996 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.620042 7.06278

CAGE analysis