Hb_002835_310

Information

Type -
Description -
Location Contig2835: 266385-267942
Sequence    

Annotation

kegg
ID rcu:RCOM_1508900
description ATP binding protein, putative
nr
ID XP_002511332.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q8GZ84
description U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2
trembl
ID B9RAV7
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1508900 PE=4 SV=1
Gene Ontology
ID GO:0006950
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29650: 266312-266666 , PASA_asmbl_29651: 267716-268403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_310 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000156_110 0.0574465533 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
3 Hb_002391_030 0.0638405086 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
4 Hb_000424_130 0.0753717416 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
5 Hb_001516_010 0.0757524419 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
6 Hb_007545_070 0.0760555576 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
7 Hb_003938_230 0.0776998174 - - Potassium transporter, putative [Ricinus communis]
8 Hb_002609_120 0.0783320196 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
9 Hb_000000_390 0.080988138 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
10 Hb_005535_070 0.0814621534 - - conserved hypothetical protein [Ricinus communis]
11 Hb_032920_020 0.0840397145 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_001079_060 0.0902118472 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
13 Hb_005018_010 0.0907320475 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_001638_200 0.0911847719 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
15 Hb_000722_030 0.0925751584 - - putative plant disease resistance family protein [Populus trichocarpa]
16 Hb_000152_350 0.0937948228 - - PREDICTED: enolase [Jatropha curcas]
17 Hb_001148_110 0.0938737831 - - -
18 Hb_060253_010 0.0955745111 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
19 Hb_005892_050 0.0973982609 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
20 Hb_009788_020 0.0977121228 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]

Gene co-expression network

sample Hb_002835_310 Hb_002835_310 Hb_000156_110 Hb_000156_110 Hb_002835_310--Hb_000156_110 Hb_002391_030 Hb_002391_030 Hb_002835_310--Hb_002391_030 Hb_000424_130 Hb_000424_130 Hb_002835_310--Hb_000424_130 Hb_001516_010 Hb_001516_010 Hb_002835_310--Hb_001516_010 Hb_007545_070 Hb_007545_070 Hb_002835_310--Hb_007545_070 Hb_003938_230 Hb_003938_230 Hb_002835_310--Hb_003938_230 Hb_004635_120 Hb_004635_120 Hb_000156_110--Hb_004635_120 Hb_002609_120 Hb_002609_120 Hb_000156_110--Hb_002609_120 Hb_001638_200 Hb_001638_200 Hb_000156_110--Hb_001638_200 Hb_032920_020 Hb_032920_020 Hb_000156_110--Hb_032920_020 Hb_000000_390 Hb_000000_390 Hb_000156_110--Hb_000000_390 Hb_005535_070 Hb_005535_070 Hb_002391_030--Hb_005535_070 Hb_002391_030--Hb_007545_070 Hb_002391_030--Hb_000424_130 Hb_002391_030--Hb_001516_010 Hb_174899_010 Hb_174899_010 Hb_002391_030--Hb_174899_010 Hb_000152_350 Hb_000152_350 Hb_000424_130--Hb_000152_350 Hb_000424_130--Hb_007545_070 Hb_000300_110 Hb_000300_110 Hb_000424_130--Hb_000300_110 Hb_029920_010 Hb_029920_010 Hb_000424_130--Hb_029920_010 Hb_127263_010 Hb_127263_010 Hb_000424_130--Hb_127263_010 Hb_001079_060 Hb_001079_060 Hb_001516_010--Hb_001079_060 Hb_051663_010 Hb_051663_010 Hb_001516_010--Hb_051663_010 Hb_111985_100 Hb_111985_100 Hb_001516_010--Hb_111985_100 Hb_001516_010--Hb_003938_230 Hb_001514_030 Hb_001514_030 Hb_001516_010--Hb_001514_030 Hb_006618_110 Hb_006618_110 Hb_007545_070--Hb_006618_110 Hb_007545_070--Hb_000300_110 Hb_005892_050 Hb_005892_050 Hb_007545_070--Hb_005892_050 Hb_000239_050 Hb_000239_050 Hb_007545_070--Hb_000239_050 Hb_008304_010 Hb_008304_010 Hb_003938_230--Hb_008304_010 Hb_002822_010 Hb_002822_010 Hb_003938_230--Hb_002822_010 Hb_001488_420 Hb_001488_420 Hb_003938_230--Hb_001488_420 Hb_000008_150 Hb_000008_150 Hb_003938_230--Hb_000008_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.815705 10.5326 7.60665 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.03329 8.59596

CAGE analysis