Hb_002822_010

Information

Type -
Description -
Location Contig2822: 44285-44960
Sequence    

Annotation

kegg
ID pop:POPTR_0016s00840g
description POPTRDRAFT_824960; copper-binding family protein
nr
ID XP_011002375.1
description PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID V9M4U8
description Cold regulated protein OS=Manihot esculenta GN=COR78 PE=2 SV=1
Gene Ontology
ID GO:0046872
description fk506-binding protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29563: 44312-45106
cDNA
(Sanger)
(ID:Location)		 034_L22.ab1: 44312-45106

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002822_010 0.0 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
2 Hb_001488_420 0.087300608 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
3 Hb_009788_020 0.0875144912 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
4 Hb_002890_200 0.0887363817 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
5 Hb_004855_080 0.0894567806 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
6 Hb_003938_230 0.0914939398 - - Potassium transporter, putative [Ricinus communis]
7 Hb_000703_120 0.0939393384 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
8 Hb_000212_410 0.0942836186 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
9 Hb_005535_070 0.098146191 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000008_150 0.0986724583 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
11 Hb_002391_030 0.1000079484 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
12 Hb_002835_310 0.1009699958 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000759_040 0.1044877689 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
14 Hb_000239_050 0.1056434807 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
15 Hb_000627_050 0.1084094374 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
16 Hb_007545_070 0.1086362571 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
17 Hb_005892_050 0.109949456 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
18 Hb_004116_050 0.1110605237 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
19 Hb_000424_130 0.1112090849 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
20 Hb_005018_010 0.1133700267 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]

Gene co-expression network

sample Hb_002822_010 Hb_002822_010 Hb_001488_420 Hb_001488_420 Hb_002822_010--Hb_001488_420 Hb_009788_020 Hb_009788_020 Hb_002822_010--Hb_009788_020 Hb_002890_200 Hb_002890_200 Hb_002822_010--Hb_002890_200 Hb_004855_080 Hb_004855_080 Hb_002822_010--Hb_004855_080 Hb_003938_230 Hb_003938_230 Hb_002822_010--Hb_003938_230 Hb_000703_120 Hb_000703_120 Hb_002822_010--Hb_000703_120 Hb_001488_420--Hb_004855_080 Hb_000008_150 Hb_000008_150 Hb_001488_420--Hb_000008_150 Hb_000759_040 Hb_000759_040 Hb_001488_420--Hb_000759_040 Hb_004218_140 Hb_004218_140 Hb_001488_420--Hb_004218_140 Hb_003506_010 Hb_003506_010 Hb_001488_420--Hb_003506_010 Hb_004602_010 Hb_004602_010 Hb_001488_420--Hb_004602_010 Hb_000212_410 Hb_000212_410 Hb_009788_020--Hb_000212_410 Hb_009788_020--Hb_000703_120 Hb_000627_050 Hb_000627_050 Hb_009788_020--Hb_000627_050 Hb_007270_020 Hb_007270_020 Hb_009788_020--Hb_007270_020 Hb_060253_010 Hb_060253_010 Hb_009788_020--Hb_060253_010 Hb_009788_020--Hb_001488_420 Hb_002890_200--Hb_000703_120 Hb_002890_200--Hb_000627_050 Hb_002890_200--Hb_009788_020 Hb_002890_200--Hb_004855_080 Hb_002890_200--Hb_001488_420 Hb_004855_080--Hb_000008_150 Hb_001405_040 Hb_001405_040 Hb_004855_080--Hb_001405_040 Hb_004855_080--Hb_000759_040 Hb_004855_080--Hb_003506_010 Hb_004855_080--Hb_004602_010 Hb_002835_310 Hb_002835_310 Hb_003938_230--Hb_002835_310 Hb_001516_010 Hb_001516_010 Hb_003938_230--Hb_001516_010 Hb_008304_010 Hb_008304_010 Hb_003938_230--Hb_008304_010 Hb_003938_230--Hb_001488_420 Hb_003938_230--Hb_000008_150 Hb_000703_120--Hb_000627_050 Hb_000703_120--Hb_000212_410 Hb_002724_010 Hb_002724_010 Hb_000703_120--Hb_002724_010 Hb_000703_120--Hb_007270_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.2058 19.5126 13.21 0.0935106 0.388064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.02611 18.1458

CAGE analysis