Hb_001514_030

Information

Type -
Description -
Location Contig1514: 20209-21687
Sequence    

Annotation

kegg
ID rcu:RCOM_1589280
description cyclin d, putative
nr
ID XP_012068292.1
description PREDICTED: cyclin-D3-3-like [Jatropha curcas]
swissprot
ID P42753
description Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3
trembl
ID A0A067KZR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16093 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12822: 20036-21961
cDNA
(Sanger)
(ID:Location)		 020_M09.ab1: 20036-20883 , 023_O12.ab1: 20036-20882

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_030 0.0 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
2 Hb_168918_010 0.0513426014 - - pectin acetylesterase, putative [Ricinus communis]
3 Hb_004037_040 0.0713377366 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
4 Hb_001079_060 0.0803740992 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
5 Hb_001516_010 0.0832563375 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
6 Hb_004122_010 0.0854152454 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
7 Hb_007218_040 0.0863885217 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
8 Hb_051663_010 0.0957976671 - - receptor-kinase, putative [Ricinus communis]
9 Hb_003938_230 0.1038300301 - - Potassium transporter, putative [Ricinus communis]
10 Hb_005181_170 0.1042874945 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
11 Hb_000189_180 0.1053685812 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
12 Hb_003666_070 0.1056000219 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
13 Hb_002609_120 0.1067877739 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
14 Hb_111985_100 0.1079762901 - - beta-galactosidase, putative [Ricinus communis]
15 Hb_000497_250 0.1093211481 - - PREDICTED: potassium transporter 5 [Jatropha curcas]
16 Hb_001958_010 0.1098397366 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
17 Hb_000418_110 0.1100862999 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
18 Hb_000005_240 0.1106887551 - - Shugoshin-1, putative [Ricinus communis]
19 Hb_000297_210 0.1109146944 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
20 Hb_005675_050 0.1116959053 - - alpha-glucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001514_030 Hb_001514_030 Hb_168918_010 Hb_168918_010 Hb_001514_030--Hb_168918_010 Hb_004037_040 Hb_004037_040 Hb_001514_030--Hb_004037_040 Hb_001079_060 Hb_001079_060 Hb_001514_030--Hb_001079_060 Hb_001516_010 Hb_001516_010 Hb_001514_030--Hb_001516_010 Hb_004122_010 Hb_004122_010 Hb_001514_030--Hb_004122_010 Hb_007218_040 Hb_007218_040 Hb_001514_030--Hb_007218_040 Hb_168918_010--Hb_007218_040 Hb_003666_070 Hb_003666_070 Hb_168918_010--Hb_003666_070 Hb_168918_010--Hb_004122_010 Hb_005976_110 Hb_005976_110 Hb_168918_010--Hb_005976_110 Hb_168918_010--Hb_004037_040 Hb_004037_040--Hb_001079_060 Hb_000189_180 Hb_000189_180 Hb_004037_040--Hb_000189_180 Hb_001958_010 Hb_001958_010 Hb_004037_040--Hb_001958_010 Hb_016333_010 Hb_016333_010 Hb_004037_040--Hb_016333_010 Hb_001079_060--Hb_001516_010 Hb_002609_120 Hb_002609_120 Hb_001079_060--Hb_002609_120 Hb_009486_050 Hb_009486_050 Hb_001079_060--Hb_009486_050 Hb_002835_310 Hb_002835_310 Hb_001079_060--Hb_002835_310 Hb_051663_010 Hb_051663_010 Hb_001516_010--Hb_051663_010 Hb_111985_100 Hb_111985_100 Hb_001516_010--Hb_111985_100 Hb_001516_010--Hb_002835_310 Hb_003938_230 Hb_003938_230 Hb_001516_010--Hb_003938_230 Hb_005675_050 Hb_005675_050 Hb_004122_010--Hb_005675_050 Hb_000297_210 Hb_000297_210 Hb_004122_010--Hb_000297_210 Hb_007632_160 Hb_007632_160 Hb_004122_010--Hb_007632_160 Hb_005181_170 Hb_005181_170 Hb_004122_010--Hb_005181_170 Hb_001140_300 Hb_001140_300 Hb_007218_040--Hb_001140_300 Hb_001396_030 Hb_001396_030 Hb_007218_040--Hb_001396_030 Hb_000112_080 Hb_000112_080 Hb_007218_040--Hb_000112_080 Hb_007811_020 Hb_007811_020 Hb_007218_040--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_007218_040--Hb_004435_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108083 0.288203 9.11408 8.34524 0.03527 0.0199879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.23457 5.09738

CAGE analysis