Hb_111985_100

Information

Type -
Description -
Location Contig111985: 63733-69567
Sequence    

Annotation

kegg
ID rcu:RCOM_1595960
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_002510455.1
description beta-galactosidase, putative [Ricinus communis]
swissprot
ID Q10RB4
description Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1
trembl
ID B9R812
description Beta-galactosidase OS=Ricinus communis GN=RCOM_1595960 PE=3 SV=1
Gene Ontology
ID GO:0004565
description beta-galactosidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03614: 63874-69843 , PASA_asmbl_03615: 63874-69843 , PASA_asmbl_03616: 67978-69843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111985_100 0.0 - - beta-galactosidase, putative [Ricinus communis]
2 Hb_001516_010 0.075666265 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
3 Hb_051663_010 0.0768662784 - - receptor-kinase, putative [Ricinus communis]
4 Hb_001541_130 0.0816371707 - - GDSL esterase/lipase [Morus notabilis]
5 Hb_032920_020 0.087789728 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_001095_020 0.0892321186 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
7 Hb_002150_090 0.0923675438 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
8 Hb_004076_060 0.0940757645 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
9 Hb_001674_010 0.0978250718 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
10 Hb_007811_020 0.0982147807 - - PREDICTED: expansin-A6 [Jatropha curcas]
11 Hb_000483_450 0.0982262511 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
12 Hb_000028_190 0.0985747119 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
13 Hb_001958_010 0.0995484788 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
14 Hb_007218_040 0.1003863564 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
15 Hb_039222_010 0.1009510391 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
16 Hb_003911_050 0.1014972598 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
17 Hb_004435_020 0.1017702657 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
18 Hb_004037_040 0.1021279079 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
19 Hb_001079_060 0.1037066003 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
20 Hb_032572_010 0.1050531525 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]

Gene co-expression network

sample Hb_111985_100 Hb_111985_100 Hb_001516_010 Hb_001516_010 Hb_111985_100--Hb_001516_010 Hb_051663_010 Hb_051663_010 Hb_111985_100--Hb_051663_010 Hb_001541_130 Hb_001541_130 Hb_111985_100--Hb_001541_130 Hb_032920_020 Hb_032920_020 Hb_111985_100--Hb_032920_020 Hb_001095_020 Hb_001095_020 Hb_111985_100--Hb_001095_020 Hb_002150_090 Hb_002150_090 Hb_111985_100--Hb_002150_090 Hb_001079_060 Hb_001079_060 Hb_001516_010--Hb_001079_060 Hb_001516_010--Hb_051663_010 Hb_002835_310 Hb_002835_310 Hb_001516_010--Hb_002835_310 Hb_003938_230 Hb_003938_230 Hb_001516_010--Hb_003938_230 Hb_001514_030 Hb_001514_030 Hb_001516_010--Hb_001514_030 Hb_000000_390 Hb_000000_390 Hb_051663_010--Hb_000000_390 Hb_000922_200 Hb_000922_200 Hb_051663_010--Hb_000922_200 Hb_051663_010--Hb_032920_020 Hb_009486_050 Hb_009486_050 Hb_051663_010--Hb_009486_050 Hb_001541_130--Hb_001095_020 Hb_002572_040 Hb_002572_040 Hb_001541_130--Hb_002572_040 Hb_001541_130--Hb_002150_090 Hb_007811_020 Hb_007811_020 Hb_001541_130--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_001541_130--Hb_004435_020 Hb_001674_010 Hb_001674_010 Hb_032920_020--Hb_001674_010 Hb_000009_270 Hb_000009_270 Hb_032920_020--Hb_000009_270 Hb_002609_120 Hb_002609_120 Hb_032920_020--Hb_002609_120 Hb_000028_190 Hb_000028_190 Hb_032920_020--Hb_000028_190 Hb_001638_200 Hb_001638_200 Hb_032920_020--Hb_001638_200 Hb_032920_020--Hb_002150_090 Hb_001095_020--Hb_001674_010 Hb_001095_020--Hb_002150_090 Hb_001095_020--Hb_000028_190 Hb_001095_020--Hb_004435_020 Hb_007163_100 Hb_007163_100 Hb_001095_020--Hb_007163_100 Hb_002150_090--Hb_000028_190 Hb_002150_090--Hb_007163_100 Hb_008054_030 Hb_008054_030 Hb_002150_090--Hb_008054_030 Hb_002066_110 Hb_002066_110 Hb_002150_090--Hb_002066_110 Hb_002150_090--Hb_001674_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.018527 1.0983 40.6871 53.9492 0.0185428 0.0564831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0280042 0.033056 0.0210894 4.91564 37.9905

CAGE analysis