Hb_002572_040

Information

Type -
Description -
Location Contig2572: 33887-35959
Sequence    

Annotation

kegg
ID rcu:RCOM_1602470
description hypothetical protein
nr
ID XP_012073538.1
description PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08012 PE=4 SV=1
Gene Ontology
ID GO:0005794
description PREDICTED: uncharacterized protein LOC105635149

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26767: 33754-35988 , PASA_asmbl_26768: 33754-35988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002572_040 0.0 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
2 Hb_002150_090 0.0710464376 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
3 Hb_001541_130 0.0749262642 - - GDSL esterase/lipase [Morus notabilis]
4 Hb_006242_050 0.0758150762 - - Osmotin precursor, putative [Ricinus communis]
5 Hb_000599_150 0.0770558639 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
6 Hb_027472_060 0.077535772 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
7 Hb_001095_020 0.0799788695 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
8 Hb_000329_780 0.0807463496 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
9 Hb_000031_180 0.0808310675 - - sarcosine oxidase, putative [Ricinus communis]
10 Hb_004032_280 0.0811576295 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
11 Hb_002066_110 0.0822769534 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
12 Hb_007163_100 0.0830405345 - - BnaC03g52280D [Brassica napus]
13 Hb_006831_090 0.0859697992 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
14 Hb_005694_160 0.0861355892 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005337_100 0.0881510797 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
16 Hb_000500_240 0.0882496391 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005842_010 0.0896638863 - - nitrate transporter, putative [Ricinus communis]
18 Hb_000520_040 0.0897883336 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_000329_440 0.0902571923 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
20 Hb_003835_080 0.0907458174 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002572_040 Hb_002572_040 Hb_002150_090 Hb_002150_090 Hb_002572_040--Hb_002150_090 Hb_001541_130 Hb_001541_130 Hb_002572_040--Hb_001541_130 Hb_006242_050 Hb_006242_050 Hb_002572_040--Hb_006242_050 Hb_000599_150 Hb_000599_150 Hb_002572_040--Hb_000599_150 Hb_027472_060 Hb_027472_060 Hb_002572_040--Hb_027472_060 Hb_001095_020 Hb_001095_020 Hb_002572_040--Hb_001095_020 Hb_000028_190 Hb_000028_190 Hb_002150_090--Hb_000028_190 Hb_002150_090--Hb_001095_020 Hb_007163_100 Hb_007163_100 Hb_002150_090--Hb_007163_100 Hb_008054_030 Hb_008054_030 Hb_002150_090--Hb_008054_030 Hb_002066_110 Hb_002066_110 Hb_002150_090--Hb_002066_110 Hb_001674_010 Hb_001674_010 Hb_002150_090--Hb_001674_010 Hb_001541_130--Hb_001095_020 Hb_111985_100 Hb_111985_100 Hb_001541_130--Hb_111985_100 Hb_001541_130--Hb_002150_090 Hb_007811_020 Hb_007811_020 Hb_001541_130--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_001541_130--Hb_004435_020 Hb_143629_170 Hb_143629_170 Hb_006242_050--Hb_143629_170 Hb_003417_050 Hb_003417_050 Hb_006242_050--Hb_003417_050 Hb_005842_010 Hb_005842_010 Hb_006242_050--Hb_005842_010 Hb_128986_010 Hb_128986_010 Hb_006242_050--Hb_128986_010 Hb_007163_110 Hb_007163_110 Hb_006242_050--Hb_007163_110 Hb_007483_090 Hb_007483_090 Hb_006242_050--Hb_007483_090 Hb_004032_280 Hb_004032_280 Hb_000599_150--Hb_004032_280 Hb_000031_180 Hb_000031_180 Hb_000599_150--Hb_000031_180 Hb_052530_020 Hb_052530_020 Hb_000599_150--Hb_052530_020 Hb_000329_780 Hb_000329_780 Hb_000599_150--Hb_000329_780 Hb_000599_150--Hb_007483_090 Hb_027472_060--Hb_004032_280 Hb_027472_060--Hb_000031_180 Hb_027472_060--Hb_005842_010 Hb_027472_060--Hb_000329_780 Hb_027472_060--Hb_000599_150 Hb_001095_020--Hb_001674_010 Hb_001095_020--Hb_000028_190 Hb_001095_020--Hb_004435_020 Hb_001095_020--Hb_007163_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116568 3.5838 28.5346 40.1181 0.0589297 0.0100209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0943008 0.0370988 0.14055 3.5215 40.4082

CAGE analysis