Hb_007163_110

Information

Type -
Description -
Location Contig7163: 181801-188377
Sequence    

Annotation

kegg
ID rcu:RCOM_0188570
description Chromosome-associated kinesin KIF4A, putative
nr
ID XP_012079501.1
description PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
swissprot
ID Q6PFD6
description Kinesin-like protein KIF18B OS=Mus musculus GN=Kif18b PE=2 SV=2
trembl
ID A0A067K7Q4
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_12608 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein kif19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55473: 185103-185864 , PASA_asmbl_55475: 187216-188009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_110 0.0 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
2 Hb_003152_020 0.0622705997 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
3 Hb_005842_010 0.069195005 - - nitrate transporter, putative [Ricinus communis]
4 Hb_006242_050 0.0697689364 - - Osmotin precursor, putative [Ricinus communis]
5 Hb_136408_040 0.0709809548 - - PREDICTED: protein NDR1 [Jatropha curcas]
6 Hb_000017_180 0.0717180545 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
7 Hb_004650_110 0.0747091502 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
8 Hb_005656_120 0.0758613404 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
9 Hb_002062_010 0.0776702665 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
10 Hb_128986_010 0.0786857848 - - conserved hypothetical protein [Ricinus communis]
11 Hb_143629_170 0.0802194623 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
12 Hb_002809_180 0.0833499332 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
13 Hb_027472_060 0.0867583494 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
14 Hb_005183_050 0.0888365028 - - hypothetical protein RCOM_1590900 [Ricinus communis]
15 Hb_000076_240 0.0890361158 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
16 Hb_001433_090 0.0892826383 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
17 Hb_003417_050 0.089991328 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_001512_130 0.0902487418 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
19 Hb_000103_440 0.0925132069 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
20 Hb_001397_020 0.0933019643 - - cytochrome P450 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007163_110 Hb_007163_110 Hb_003152_020 Hb_003152_020 Hb_007163_110--Hb_003152_020 Hb_005842_010 Hb_005842_010 Hb_007163_110--Hb_005842_010 Hb_006242_050 Hb_006242_050 Hb_007163_110--Hb_006242_050 Hb_136408_040 Hb_136408_040 Hb_007163_110--Hb_136408_040 Hb_000017_180 Hb_000017_180 Hb_007163_110--Hb_000017_180 Hb_004650_110 Hb_004650_110 Hb_007163_110--Hb_004650_110 Hb_001397_020 Hb_001397_020 Hb_003152_020--Hb_001397_020 Hb_003152_020--Hb_136408_040 Hb_010589_010 Hb_010589_010 Hb_003152_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003152_020--Hb_002809_180 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_005842_010--Hb_006242_050 Hb_000424_140 Hb_000424_140 Hb_005842_010--Hb_000424_140 Hb_000670_070 Hb_000670_070 Hb_005842_010--Hb_000670_070 Hb_009421_070 Hb_009421_070 Hb_005842_010--Hb_009421_070 Hb_027472_060 Hb_027472_060 Hb_005842_010--Hb_027472_060 Hb_143629_170 Hb_143629_170 Hb_006242_050--Hb_143629_170 Hb_003417_050 Hb_003417_050 Hb_006242_050--Hb_003417_050 Hb_128986_010 Hb_128986_010 Hb_006242_050--Hb_128986_010 Hb_007483_090 Hb_007483_090 Hb_006242_050--Hb_007483_090 Hb_002062_010 Hb_002062_010 Hb_136408_040--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_136408_040--Hb_001512_130 Hb_136408_040--Hb_000017_180 Hb_000076_240 Hb_000076_240 Hb_136408_040--Hb_000076_240 Hb_000017_180--Hb_002062_010 Hb_005183_050 Hb_005183_050 Hb_000017_180--Hb_005183_050 Hb_000017_180--Hb_003417_050 Hb_005656_120 Hb_005656_120 Hb_000017_180--Hb_005656_120 Hb_000017_180--Hb_128986_010 Hb_000017_180--Hb_007483_090 Hb_004650_110--Hb_002809_180 Hb_004650_110--Hb_003152_020 Hb_004650_110--Hb_000017_180 Hb_001289_070 Hb_001289_070 Hb_004650_110--Hb_001289_070 Hb_004650_110--Hb_128986_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.561043 4.68631 12.3063 0.0460858 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0261679 0 0 0.730001 12.2617

CAGE analysis