Hb_005000_150

Information

Type -
Description -
Location Contig5000: 139285-140946
Sequence    

Annotation

kegg
ID rcu:RCOM_1046920
description hypothetical protein
nr
ID XP_002514111.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SU79
description Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1
trembl
ID B9RK67
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1046920 PE=4 SV=1
Gene Ontology
ID GO:0016491
description probable polyamine oxidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45806: 139198-140781 , PASA_asmbl_45807: 140853-141035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001140_290 0.0546858171 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
3 Hb_002151_070 0.0590259412 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
4 Hb_001514_050 0.0688986915 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
5 Hb_003152_020 0.0721333861 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
6 Hb_001397_020 0.0738595948 - - cytochrome P450 family protein [Populus trichocarpa]
7 Hb_001289_070 0.0783514122 - - PREDICTED: protein YLS9-like [Jatropha curcas]
8 Hb_010589_010 0.0813920184 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
9 Hb_005183_050 0.0823245061 - - hypothetical protein RCOM_1590900 [Ricinus communis]
10 Hb_015807_130 0.0876379235 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
11 Hb_001408_200 0.0889354284 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
12 Hb_005711_030 0.0889475028 - - hypothetical protein RCOM_0460020 [Ricinus communis]
13 Hb_000103_440 0.0911583445 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
14 Hb_001433_090 0.0930957891 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
15 Hb_008518_060 0.095151172 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
16 Hb_001657_020 0.0954484338 - - heat shock family protein [Populus trichocarpa]
17 Hb_002809_180 0.0959782743 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
18 Hb_001557_010 0.095982282 - - PREDICTED: extensin [Jatropha curcas]
19 Hb_000813_070 0.0962107236 - - conserved hypothetical protein [Ricinus communis]
20 Hb_138977_010 0.0963342327 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_005000_150 Hb_005000_150 Hb_001140_290 Hb_001140_290 Hb_005000_150--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_005000_150--Hb_002151_070 Hb_001514_050 Hb_001514_050 Hb_005000_150--Hb_001514_050 Hb_003152_020 Hb_003152_020 Hb_005000_150--Hb_003152_020 Hb_001397_020 Hb_001397_020 Hb_005000_150--Hb_001397_020 Hb_001289_070 Hb_001289_070 Hb_005000_150--Hb_001289_070 Hb_001140_290--Hb_002151_070 Hb_138977_010 Hb_138977_010 Hb_001140_290--Hb_138977_010 Hb_002809_180 Hb_002809_180 Hb_001140_290--Hb_002809_180 Hb_000103_440 Hb_000103_440 Hb_001140_290--Hb_000103_440 Hb_010589_010 Hb_010589_010 Hb_001140_290--Hb_010589_010 Hb_002151_070--Hb_000103_440 Hb_000813_070 Hb_000813_070 Hb_002151_070--Hb_000813_070 Hb_005711_030 Hb_005711_030 Hb_002151_070--Hb_005711_030 Hb_002151_070--Hb_001289_070 Hb_001514_050--Hb_002151_070 Hb_001514_050--Hb_001140_290 Hb_001712_030 Hb_001712_030 Hb_001514_050--Hb_001712_030 Hb_003090_190 Hb_003090_190 Hb_001514_050--Hb_003090_190 Hb_001514_050--Hb_001289_070 Hb_003152_020--Hb_001397_020 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_003152_020--Hb_010589_010 Hb_003152_020--Hb_002809_180 Hb_003549_100 Hb_003549_100 Hb_001397_020--Hb_003549_100 Hb_001397_020--Hb_010589_010 Hb_001397_020--Hb_002809_180 Hb_010883_160 Hb_010883_160 Hb_001397_020--Hb_010883_160 Hb_000002_110 Hb_000002_110 Hb_001397_020--Hb_000002_110 Hb_001289_070--Hb_005711_030 Hb_015807_130 Hb_015807_130 Hb_001289_070--Hb_015807_130 Hb_001289_070--Hb_003152_020 Hb_001289_070--Hb_000813_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0273614 2.69528 5.55782 26.9312 0.0839805 0.0775209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.66206 28.1838

CAGE analysis