Hb_136408_040

Information

Type -
Description -
Location Contig136408: 19826-27988
Sequence    

Annotation

kegg
ID cic:CICLE_v10017613mg
description hypothetical protein
nr
ID XP_012091418.1
description PREDICTED: protein NDR1 [Jatropha curcas]
swissprot
ID O48915
description Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
trembl
ID A0A067JAH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10046: 19714-20261 , PASA_asmbl_10047: 27134-27986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136408_040 0.0 - - PREDICTED: protein NDR1 [Jatropha curcas]
2 Hb_003152_020 0.0655259964 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
3 Hb_007163_110 0.0709809548 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
4 Hb_002062_010 0.0737642939 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
5 Hb_001512_130 0.0756236014 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
6 Hb_000017_180 0.0804869065 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
7 Hb_000076_240 0.0813471096 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
8 Hb_005295_020 0.082955679 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
9 Hb_005656_120 0.0836857817 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
10 Hb_001433_090 0.0843603717 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
11 Hb_000103_440 0.0861714652 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
12 Hb_000232_040 0.0866265102 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
13 Hb_005183_050 0.0892930379 - - hypothetical protein RCOM_1590900 [Ricinus communis]
14 Hb_001541_200 0.0894087611 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
15 Hb_015807_130 0.0903619346 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
16 Hb_010589_010 0.0917218803 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
17 Hb_001657_020 0.0929486323 - - heat shock family protein [Populus trichocarpa]
18 Hb_002809_180 0.0980841076 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
19 Hb_001397_020 0.0981363231 - - cytochrome P450 family protein [Populus trichocarpa]
20 Hb_020956_030 0.0998079343 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_136408_040 Hb_136408_040 Hb_003152_020 Hb_003152_020 Hb_136408_040--Hb_003152_020 Hb_007163_110 Hb_007163_110 Hb_136408_040--Hb_007163_110 Hb_002062_010 Hb_002062_010 Hb_136408_040--Hb_002062_010 Hb_001512_130 Hb_001512_130 Hb_136408_040--Hb_001512_130 Hb_000017_180 Hb_000017_180 Hb_136408_040--Hb_000017_180 Hb_000076_240 Hb_000076_240 Hb_136408_040--Hb_000076_240 Hb_001397_020 Hb_001397_020 Hb_003152_020--Hb_001397_020 Hb_003152_020--Hb_007163_110 Hb_010589_010 Hb_010589_010 Hb_003152_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003152_020--Hb_002809_180 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_005842_010 Hb_005842_010 Hb_007163_110--Hb_005842_010 Hb_006242_050 Hb_006242_050 Hb_007163_110--Hb_006242_050 Hb_007163_110--Hb_000017_180 Hb_004650_110 Hb_004650_110 Hb_007163_110--Hb_004650_110 Hb_128986_010 Hb_128986_010 Hb_002062_010--Hb_128986_010 Hb_015561_010 Hb_015561_010 Hb_002062_010--Hb_015561_010 Hb_002062_010--Hb_000017_180 Hb_005656_120 Hb_005656_120 Hb_002062_010--Hb_005656_120 Hb_003417_050 Hb_003417_050 Hb_002062_010--Hb_003417_050 Hb_002119_100 Hb_002119_100 Hb_002062_010--Hb_002119_100 Hb_001512_130--Hb_015561_010 Hb_001512_130--Hb_002062_010 Hb_001512_130--Hb_000017_180 Hb_001512_130--Hb_005656_120 Hb_009023_010 Hb_009023_010 Hb_001512_130--Hb_009023_010 Hb_005183_050 Hb_005183_050 Hb_000017_180--Hb_005183_050 Hb_000017_180--Hb_003417_050 Hb_000017_180--Hb_005656_120 Hb_000017_180--Hb_128986_010 Hb_007483_090 Hb_007483_090 Hb_000017_180--Hb_007483_090 Hb_003549_100 Hb_003549_100 Hb_000076_240--Hb_003549_100 Hb_010883_160 Hb_010883_160 Hb_000076_240--Hb_010883_160 Hb_132880_010 Hb_132880_010 Hb_000076_240--Hb_132880_010 Hb_000076_240--Hb_001397_020 Hb_000076_240--Hb_003152_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0170432 0.163605 1.31791 3.59581 0.0668813 0.0240416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.147103 3.85493

CAGE analysis